RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LARP4BQ92615 738 aaKnown RBP15.04■□□□□ -0
SHMT2-222ENST00000555774 CDK5RAP3Q96JB5 506 aa15.04■□□□□ -0
SHMT2-222ENST00000555774 PCMTD1Q96MG8 357 aaPredicted RBP15.04■□□□□ -0
SHMT2-222ENST00000555774 RHOXF2Q9BQY4 288 aa15.04■□□□□ -0
SHMT2-222ENST00000555774 SEMA6BQ9H3T3 888 aa15.04■□□□□ -0
SHMT2-222ENST00000555774 BLOC1S4Q9NUP1 217 aa15.04■□□□□ -0
SHMT2-222ENST00000555774 USP14P54578 494 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 SEPT2Q15019 361 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 VWA3BQ502W6 1294 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 NCAPH2Q6IBW4 605 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 ARHGAP27Q6ZUM4 889 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 GPR101Q96P66 508 aaPredicted RBP15.03■□□□□ -0
SHMT2-222ENST00000555774 PNMA5Q96PV4 448 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 MTMR4Q9NYA4 1195 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 SUGT1Q9Y2Z0 365 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 IGKV6D-41A0A0C4DH26 115 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 ATP1A1P05023 1023 aaKnown RBP15.03■□□□□ -0
SHMT2-222ENST00000555774 TXKP42681 527 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 SPA17Q15506 151 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 MAN2A1Q16706 1144 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 MAP9Q49MG5 647 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 PPP4R3AQ6IN85 833 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 IQCEQ6IPM2 695 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 CCDC84Q86UT8 332 aaPredicted RBP15.03■□□□□ -0
SHMT2-222ENST00000555774 NOA1Q8NC60 698 aaKnown RBP15.03■□□□□ -0
SHMT2-222ENST00000555774 RAD54LQ92698 747 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 C8orf37Q96NL8 207 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 VIPAS39Q9H9C1 493 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 VAT1LQ9HCJ6 419 aa15.03■□□□□ -0
SHMT2-222ENST00000555774 ERICH4A6NGS2 130 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 MYMKA6NI61 221 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 H3BQF6 201 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 GABPAQ06546 454 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 KIF5AQ12840 1032 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 TMEM119Q4V9L6 283 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 KRT79Q5XKE5 535 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 TMC4Q7Z404 712 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 NAP1L4Q99733 375 aaKnown RBP15.02■□□□□ -0
SHMT2-222ENST00000555774 EDEM3Q9BZQ6 932 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 RIC8AQ9NPQ8 531 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 PLAGL2Q9UPG8 496 aa15.02■□□□□ -0
SHMT2-222ENST00000555774 FOCADQ5VW36 1801 aa15.02□□□□□ -0.01
SHMT2-222ENST00000555774 SLC26A4O43511 780 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 USO1O60763 962 aaKnown RBP15.01□□□□□ -0.01
SHMT2-222ENST00000555774 CASP8Q14790 479 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 FAM196AQ6ZSG2 479 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 SLC51AQ86UW1 340 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 PROM2Q8N271 834 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 CCDC42Q96M95 316 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 PDE11AQ9HCR9 933 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 TMEM260Q9NX78 707 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 SWAP70Q9UH65 585 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 SIK3Q9Y2K2 1263 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 TOM1O60784 492 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 LCA5LO95447 670 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 HOXA10P31260 410 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-222ENST00000555774 KLK7P49862 253 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 MCM6Q14566 821 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 RUBCNQ92622 972 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 SECISBP2LQ93073 1101 aaKnown RBP15.01□□□□□ -0.01
SHMT2-222ENST00000555774 TSG101Q99816 390 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 UBA5Q9GZZ9 404 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 NDST4Q9H3R1 872 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 SLC39A2Q9NP94 309 aa15.01□□□□□ -0.01
SHMT2-222ENST00000555774 PNMA6FA0A0J9YX94 578 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 TFRCP02786 760 aaKnown RBP15□□□□□ -0.01
SHMT2-222ENST00000555774 GCFC2P16383 781 aaKnown RBP15□□□□□ -0.01
SHMT2-222ENST00000555774 EHHADHQ08426 723 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 TRIM58Q8NG06 486 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 TBC1D16Q8TBP0 767 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 FAM71BQ8TC56 605 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 CRAMP1Q96RY5 1269 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 ZCCHC17Q9NP64 241 aaKnown RBP15□□□□□ -0.01
SHMT2-222ENST00000555774 MED4Q9NPJ6 270 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 DAGLAQ9Y4D2 1042 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 SLC37A4O43826 429 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 MUM1L1Q5H9M0 696 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 SNX29Q8TEQ0 813 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 MMS19Q96T76 1030 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 LACRTQ9GZZ8 138 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 ADAM21Q9UKJ8 722 aa15□□□□□ -0.01
SHMT2-222ENST00000555774 LRRC37AA6NMS7 1700 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 ENC1O14682 589 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 TACC1O75410 805 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 TTLL1O95922 423 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 PRLRP16471 622 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 CLK2P49760 499 aaKnown RBP14.99□□□□□ -0.01
SHMT2-222ENST00000555774 ITIH3Q06033 890 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 ZNF543Q08ER8 600 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 HSP90B2PQ58FF3 399 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 GLT8D2Q9H1C3 349 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 HDAC6Q9UBN7 1215 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 JRKLQ9Y4A0 524 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 FRMPD2Q68DX3 1309 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-222ENST00000555774 RCCD1A6NED2 376 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 TDP2O95551 362 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 HYIQ5T013 277 aa14.99□□□□□ -0.01
SHMT2-222ENST00000555774 GPATCH4Q5T3I0 446 aaKnown RBP14.99□□□□□ -0.01
SHMT2-222ENST00000555774 ZNF572Q7Z3I7 529 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-222ENST00000555774 COA7Q96BR5 231 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms