RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ITGBL1O95965 494 aaPredicted RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 FAM200BP0CF97 657 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 GYG1P46976 350 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 CCT5P48643 541 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 LIG3P49916 1009 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 HIRAP54198 1017 aaPredicted RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 RIPK1Q13546 671 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 NR1I3Q14994 352 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 TTF1Q15361 905 aaPredicted RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 CFAP100Q494V2 611 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 PAPD7Q5XG87 772 aaKnown RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 TSHZ3Q63HK5 1081 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 SYNE3Q6ZMZ3 975 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 EIF1ADQ8N9N8 165 aaKnown RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 AENQ8WTP8 325 aaKnown RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 CAVIN3Q969G5 261 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 CRACR2AQ9BSW2 395 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.85□□□□□ -1.47
USP28-213ENST00000544967 INO80BQ9C086 356 aaPredicted RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 LRRC27Q9C0I9 530 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 KCNQ5Q9NR82 932 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 PLIN4Q96Q06 1357 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 ME1P48163 572 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 PPP2R5AQ15172 486 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 UBE3CQ15386 1083 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 SNCBQ16143 134 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 AP1ARQ63HQ0 302 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 CCDC70Q6NSX1 233 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 APOBEC3HQ6NTF7 200 aaKnown RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 EMBQ6PCB8 327 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 CPLX2Q6PUV4 134 aaKnown RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 C6orf89Q6UWU4 347 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 GIPC2Q8TF65 315 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 N4BP2L2Q92802 583 aaPredicted RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 PIF1Q9H611 641 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 KAT14Q9H8E8 782 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 JADE2Q9NQC1 790 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 INTS13Q9NVM9 706 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 MYO6Q9UM54 1294 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 CAPN7Q9Y6W3 813 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 GOLGB1Q14789 3259 aaKnown RBP5.85□□□□□ -1.47
USP28-213ENST00000544967 PDLIM1O00151 329 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 SPTLC2O15270 562 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 IFIT2P09913 472 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 VEGFAP15692 232 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 NDUFA8P51970 172 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 BIRC2Q13490 618 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 TCEAL1Q15170 157 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CCDC40Q4G0X9 1142 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CEP85LQ5SZL2 805 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CDCA2Q69YH5 1023 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 TOGARAM2Q6ZUX3 1019 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 MMGT1Q8N4V1 131 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 MREGQ8N565 214 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 BCAS4Q8TDM0 211 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 TEPSINQ96N21 525 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 EPN3Q9H201 632 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 DBNDD1Q9H9R9 158 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 MYOZ2Q9NPC6 264 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 AGPSO00116 658 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 TBC1D12O60347 775 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 DNAJC8O75937 253 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 PRLRP16471 622 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 FKBP1BP68106 108 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 PDAP1Q13442 181 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 RBBP5Q15291 538 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 GRIK5Q16478 980 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 DPY19L2Q6NUT2 758 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CLIC6Q96NY7 704 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 GPR101Q96P66 508 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 JPH2Q9BR39 696 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 RIOK1Q9BRS2 568 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 EPC1Q9H2F5 836 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 ZNF112Q9UJU3 913 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 MGAMO43451 1857 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 C6orf229H3BNL8 230 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 USP17L8P0C7I0 530 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CPA1P15085 419 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 EPHX2P34913 555 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CDR1P51861 262 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 NAP1L1P55209 391 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 TAGLNQ01995 201 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 XRCC4Q13426 336 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 SLC39A14Q15043 492 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 ZRSR2Q15696 482 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 SLC5A9Q2M3M2 681 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CMPK2Q5EBM0 449 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 FBXW10Q5XX13 1052 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 PPP4R3AQ6IN85 833 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 KANK3Q6NY19 840 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 CCNI2Q6ZMN8 369 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 RPUSD2Q8IZ73 545 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 CFAP61Q8NHU2 1237 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 ZNF483Q8TF39 744 aaPredicted RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 NEUROD6Q96NK8 337 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 HAUS4Q9H6D7 363 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 MRPL44Q9H9J2 332 aaKnown RBP5.84□□□□□ -1.47
USP28-213ENST00000544967 SWAP70Q9UH65 585 aa5.84□□□□□ -1.47
USP28-213ENST00000544967 TMA7Q9Y2S6 64 aaKnown RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms