RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 USHBP1Q8N6Y0 703 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 DACT3Q96B18 629 aaPredicted RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 RBM14Q96PK6 669 aaKnown RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 PSKH2Q96QS6 385 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 ESF1Q9H501 851 aaKnown RBP9.77□□□□□ -0.85
VPS13D-212ENST00000543766 SLC4A7Q9Y6M7 1214 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 NWD1Q149M9 1564 aa9.77□□□□□ -0.85
VPS13D-212ENST00000543766 DCAF8L1A6NGE4 600 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 GNPATO15228 680 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 PIP5K1CO60331 668 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 GSPT1P15170 499 aaKnown RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 EXOSC9Q06265 439 aaKnown RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 MTERF2Q49AM1 385 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 CCDC183Q5T5S1 534 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 RPGRIP1Q96KN7 1286 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 C9orf78Q9NZ63 289 aaPredicted RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 TIMM22Q9Y584 194 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 TMEM131LA2VDJ0 1609 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 LRRIQ4A6NIV6 560 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 TNFRSF10BO14763 440 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 MYL6P60660 151 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 GNL2Q13823 731 aaKnown RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 KIF22Q14807 665 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 SUZ12Q15022 739 aaKnown RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 CFAP157Q5JU67 520 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 NBPF15Q8N660 670 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 TRIM5Q9C035 493 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 HACD3Q9P035 362 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 TAGLN3Q9UI15 199 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 ADAM21Q9UKJ8 722 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 EFR3BQ9Y2G0 817 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 SOX5P35711 763 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 EPS15P42566 896 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 STT3AP46977 705 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 STK38Q15208 465 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 CLPPQ16740 277 aaPredicted RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 GOLM1Q8NBJ4 401 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 ACMSDQ8TDX5 336 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 SKA1Q96BD8 255 aa9.76□□□□□ -0.85
VPS13D-212ENST00000543766 DDX18Q9NVP1 670 aaKnown RBP9.76□□□□□ -0.85
VPS13D-212ENST00000543766 TMEM247A6NEH6 219 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 ZSCAN12O43309 604 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 TSPAN1O60635 241 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 S100A5P33763 92 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 CORO6Q6QEF8 472 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 CACTINQ8WUQ7 758 aaKnown RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 DTNBP1Q96EV8 351 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 PLVAPQ9BX97 442 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 GUCA1CO95843 209 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 MX1P20591 662 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 HADHAP40939 763 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 PEX5P50542 639 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 MXRA7P84157 204 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 MAPRE1Q15691 268 aaKnown RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 PROSER3Q2NL68 480 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 IFFO2Q5TF58 517 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 C3orf67Q6ZVT6 689 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 ZBTB8BQ8NAP8 495 aaPredicted RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 PPFIBP2Q8ND30 876 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 AVENQ9NQS1 362 aaPredicted RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 ARHGEF38Q9NXL2 777 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 PRKACAP17612 351 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 EVI2BP34910 448 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 TUBA3CQ13748 450 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 CDCA2Q69YH5 1023 aaPredicted RBP9.75□□□□□ -0.85
VPS13D-212ENST00000543766 MDM1Q8TC05 714 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 OSCP1Q8WVF1 389 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 ERO1AQ96HE7 468 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 ACAP3Q96P50 834 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 CNGB3Q9NQW8 809 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 LNPEPQ9UIQ6 1025 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 RTL1A6NKG5 1358 aa9.75□□□□□ -0.85
VPS13D-212ENST00000543766 CEP170BQ9Y4F5 1589 aaPredicted RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 SPTLC1O15269 473 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 HCLS1P14317 486 aaPredicted RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 POLA2Q14181 598 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 KSR1Q8IVT5 923 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 ESX1Q8N693 406 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 SLC35B4Q969S0 331 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 NUDT16Q96DE0 195 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 PPP1R36Q96LQ0 422 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 CPA1P15085 419 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 WEE1P30291 646 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 ETFBP38117 255 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 MRPL12P52815 198 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 SLC8A3P57103 927 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 MAP3K9P80192 1104 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 GNA13Q14344 377 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 RILPL1Q5EBL4 403 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 THEMISQ8N1K5 641 aaPredicted RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 PDCD7Q8N8D1 485 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 EPS8L3Q8TE67 593 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 NLRP4Q96MN2 994 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 RUNDC3BQ96NL0 473 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 ZNF215Q9UL58 517 aaPredicted RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 NOB1Q9ULX3 412 aaKnown RBP9.74□□□□□ -0.85
VPS13D-212ENST00000543766 PRKAB1Q9Y478 270 aa9.74□□□□□ -0.85
VPS13D-212ENST00000543766 PCDHGC5Q9Y5F6 944 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms