RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 DNAH12Q6ZR08 3092 aa17.49■□□□□ 0.39
USP39-217ENST00000491659 DCDC2CA8MYV0 355 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 NKRFO15226 690 aaKnown RBP eCLIP17.48■□□□□ 0.39
USP39-217ENST00000491659 CYTH3O43739 400 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 CABYRO75952 493 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 HSD17B4P51659 736 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 GHRHRQ02643 423 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 ANKRD33Q7Z3H0 272 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 SAMD3Q8N6K7 520 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 OR6J1Q8NGC5 347 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 RRP36Q96EU6 259 aaKnown RBP17.48■□□□□ 0.39
USP39-217ENST00000491659 TOX2Q96NM4 488 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 IWS1Q96ST2 819 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 SPZ1Q9BXG8 430 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 LRRC2Q9BYS8 371 aa17.48■□□□□ 0.39
USP39-217ENST00000491659 SEC63Q9UGP8 760 aaKnown RBP17.48■□□□□ 0.39
USP39-217ENST00000491659 OPLAHO14841 1288 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 EIF2AK2P19525 551 aaKnown RBP17.47■□□□□ 0.39
USP39-217ENST00000491659 PTGS1P23219 599 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 CPT1AP50416 773 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 TTLL4Q14679 1199 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 STXBP2Q15833 593 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 BRDTQ58F21 947 aaPredicted RBP17.47■□□□□ 0.39
USP39-217ENST00000491659 TMEM63BQ5T3F8 832 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 CXCL17Q6UXB2 119 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 SYNE3Q6ZMZ3 975 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 PIBF1Q8WXW3 757 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 PXMP2Q9NR77 195 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 TMEM39AQ9NV64 488 aa17.47■□□□□ 0.39
USP39-217ENST00000491659 GCOM1H8Y6P7 765 aaPredicted RBP17.46■□□□□ 0.39
USP39-217ENST00000491659 ARVCFO00192 962 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 TLR3O15455 904 aaKnown RBP17.46■□□□□ 0.39
USP39-217ENST00000491659 POLR2MP0CAP2 368 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 TXNP10599 105 aaKnown RBP17.46■□□□□ 0.39
USP39-217ENST00000491659 RXRAP19793 462 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 SMARCA1P28370 1054 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 COL9A3Q14050 684 aaPredicted RBP17.46■□□□□ 0.39
USP39-217ENST00000491659 TSGA10IPQ3SY00 556 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 ERICH6BQ5W0A0 696 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 SH3RF1Q7Z6J0 888 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 SGMS1Q86VZ5 419 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 MICU3Q86XE3 530 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 RASEFQ8IZ41 740 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 POLR3EQ9NVU0 708 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 PPP4R2Q9NY27 417 aa17.46■□□□□ 0.39
USP39-217ENST00000491659 TRIM43BA6NCK2 446 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 KIAA0355O15063 1070 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 REC8O95072 547 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 PLEKHA8P1O95397 391 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 HMGB1P09429 215 aaKnown RBP17.45■□□□□ 0.38
USP39-217ENST00000491659 RAG1P15918 1043 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 HOXA13P31271 388 aaPredicted RBP17.45■□□□□ 0.38
USP39-217ENST00000491659 SEPT14Q6ZU15 432 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 DHX32Q7L7V1 743 aaKnown RBP17.45■□□□□ 0.38
USP39-217ENST00000491659 RAB11FIP4Q86YS3 637 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 BADQ92934 168 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 TRIM43Q96BQ3 446 aaPredicted RBP17.45■□□□□ 0.38
USP39-217ENST00000491659 SEZ6LQ9BYH1 1024 aa17.45■□□□□ 0.38
USP39-217ENST00000491659 NR3C2P08235 984 aa17.44■□□□□ 0.38
USP39-217ENST00000491659 MYL3P08590 195 aa17.44■□□□□ 0.38
USP39-217ENST00000491659 CDK7P50613 346 aa17.44■□□□□ 0.38
USP39-217ENST00000491659 FAAP100Q0VG06 881 aa17.44■□□□□ 0.38
USP39-217ENST00000491659 ADCK5Q3MIX3 580 aa17.44■□□□□ 0.38
USP39-217ENST00000491659 EIF3JO75822 258 aaKnown RBP17.43■□□□□ 0.38
USP39-217ENST00000491659 ARIH2O95376 493 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 MYCLP12524 364 aaPredicted RBP17.43■□□□□ 0.38
USP39-217ENST00000491659 FGD1P98174 961 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 EXOSC10Q01780 885 aaKnown RBP17.43■□□□□ 0.38
USP39-217ENST00000491659 ITGA7Q13683 1181 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 TMTC3Q6ZXV5 915 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 FCHSD1Q86WN1 690 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 FAM126BQ8IXS8 530 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 SRBD1Q8N5C6 995 aaKnown RBP17.43■□□□□ 0.38
USP39-217ENST00000491659 FANCBQ8NB91 859 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 COPS5Q92905 334 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 TCEANC2Q96MN5 208 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 PDCD2LQ9BRP1 358 aa17.43■□□□□ 0.38
USP39-217ENST00000491659 RBM28Q9NW13 759 aaKnown RBP17.43■□□□□ 0.38
USP39-217ENST00000491659 RANBP2P49792 3224 aaKnown RBP17.43■□□□□ 0.38
USP39-217ENST00000491659 GH1P01241 217 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 CCND2P30279 289 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 HSPA4P34932 840 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 PGM5Q15124 567 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 LRIT3Q3SXY7 679 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 APOA5Q6Q788 366 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 CMTR1Q8N1G2 835 aaKnown RBP17.42■□□□□ 0.38
USP39-217ENST00000491659 CUL5Q93034 780 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 JAKMIP1Q96N16 626 aaKnown RBP17.42■□□□□ 0.38
USP39-217ENST00000491659 MTG1Q9BT17 334 aaPredicted RBP17.42■□□□□ 0.38
USP39-217ENST00000491659 TBX21Q9UL17 535 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 MRVI1Q9Y6F6 885 aa17.42■□□□□ 0.38
USP39-217ENST00000491659 MYH7BA7E2Y1 1941 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 SCN10AQ9Y5Y9 1956 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 SOX1O00570 391 aaPredicted RBP17.41■□□□□ 0.38
USP39-217ENST00000491659 ZBTB43O43298 467 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 KPNA6O60684 536 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 PSMC6P62333 389 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 PURAQ00577 322 aaKnown RBP17.41■□□□□ 0.38
USP39-217ENST00000491659 RTN1Q16799 776 aa17.41■□□□□ 0.38
USP39-217ENST00000491659 CCDC62Q6P9F0 684 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms