RNA–Protein interactions for RNA: ENST00000489898.1

SRSF4-204, Transcript of serine and arginine rich splicing factor 4, human

TSL 3

Gene SRSF4, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRSF4-204	ENST00000489898	PCSK9	Q8NBP7	692 aa	Known RBP	13.81	□□□□□ -0.2
SRSF4-204	ENST00000489898	NUP133	Q8WUM0	1156 aa		13.81	□□□□□ -0.2
SRSF4-204	ENST00000489898	GLT1D1	Q96MS3	346 aa		13.81	□□□□□ -0.2
SRSF4-204	ENST00000489898		U3KPZ7	1027 aa	Predicted RBP	13.81	□□□□□ -0.2
SRSF4-204	ENST00000489898	COL4A6	Q14031	1691 aa		13.81	□□□□□ -0.2
SRSF4-204	ENST00000489898	NLRC5	Q86WI3	1866 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	TIMP1	P01033	207 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	CCDC178	Q5BJE1	867 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	BMP2KL	Q5H9B9	411 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	PPP1R13L	Q8WUF5	828 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	NOC4L	Q9BVI4	516 aa	Known RBP	13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	WDR11	Q9BZH6	1224 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	MAF1	Q9H063	256 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	ADD3	Q9UEY8	706 aa	Known RBP	13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898	KIAA1671	Q9BY89	1806 aa		13.8	□□□□□ -0.2
SRSF4-204	ENST00000489898		A6NJR5	290 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	KLRF2	D3W0D1	207 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	SH2B2	O14492	632 aa	Predicted RBP	13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	SLC27A2	O14975	620 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	DYNC1LI2	O43237	492 aa	Predicted RBP	13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	HOXD8	P13378	290 aa	Predicted RBP	13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	MFSD5	Q6N075	450 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	KIAA1211	Q6ZU35	1233 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	DEFB123	Q8N688	67 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	KAT2B	Q92831	832 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	UBAC1	Q9BSL1	405 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	MYL10	Q9BUA6	226 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	PXMP2	Q9NR77	195 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	MROH7	Q68CQ1	1323 aa		13.79	□□□□□ -0.2
SRSF4-204	ENST00000489898	ZBTB5	O15062	677 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	FPGS	Q05932	587 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	SEMA3F	Q13275	785 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	ITGA7	Q13683	1181 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	TMEM240	Q5SV17	173 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	FBXO11	Q86XK2	927 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.78	□□□□□ -0.2	3e-16	■■□□□ 12.7
SRSF4-204	ENST00000489898	PIGS	Q96S52	555 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	TRPV6	Q9H1D0	765 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	TMEM39A	Q9NV64	488 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	PNMA2	Q9UL42	364 aa		13.78	□□□□□ -0.2
SRSF4-204	ENST00000489898	PLEKHA8P1	O95397	391 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	MMP3	P08254	477 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	CSF2RA	P15509	400 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	CYP2C18	P33260	490 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	HIC1	Q14526	733 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	PPP2R5B	Q15173	497 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	ZNF654	Q8IZM8	581 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	NCOA7	Q8NI08	942 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	SCFD2	Q8WU76	684 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	RUFY2	Q8WXA3	655 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	PDCD2L	Q9BRP1	358 aa		13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	TRMT13	Q9NUP7	481 aa	Known RBP	13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.77	□□□□□ -0.21
SRSF4-204	ENST00000489898	NID2	Q14112	1375 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	DCDC2C	A8MYV0	355 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	IFIT3	O14879	490 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	CABYR	O75952	493 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	RAG1	P15918	1043 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	EIF2AK2	P19525	551 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	SMAD3	P84022	425 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	FUT2	Q10981	343 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	GPNMB	Q14956	572 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	CREB3L3	Q68CJ9	461 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	RASEF	Q8IZ41	740 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	OR6J1	Q8NGC5	347 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	DHX38	Q92620	1227 aa	Known RBP	13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	EMID1	Q96A84	441 aa	Predicted RBP	13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	MAP3K14	Q99558	947 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	SPZ1	Q9BXG8	430 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	AMN	Q9BXJ7	453 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	PPP1R12C	Q9BZL4	782 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	BCAS3	Q9H6U6	928 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	SPC25	Q9HBM1	224 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	PRKAG2	Q9UGJ0	569 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	STXBP5L	Q9Y2K9	1186 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	TELO2	Q9Y4R8	837 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	MYO9B	Q13459	2157 aa		13.76	□□□□□ -0.21
SRSF4-204	ENST00000489898	KAT6A	Q92794	2004 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	CNTNAP5	Q8WYK1	1306 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	NKRF	O15226	690 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	PRC1	O43663	620 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	DDAH1	O94760	285 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	HOXA13	P31271	388 aa	Predicted RBP	13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	MRPS9	P82933	396 aa	Known RBP	13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	SP2	Q02086	613 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	PDE4D	Q08499	809 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	WTAP	Q15007	396 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	PGM5	Q15124	567 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	LY6K	Q17RY6	165 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	ADCK5	Q3MIX3	580 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	TMEM67	Q5HYA8	995 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	TRAF7	Q6Q0C0	670 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	SRBD1	Q8N5C6	995 aa	Known RBP	13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	WNT8B	Q93098	351 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	RMDN3	Q96TC7	470 aa		13.75	□□□□□ -0.21
SRSF4-204	ENST00000489898	MTA3	Q9BTC8	594 aa		13.75	□□□□□ -0.21

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