RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 HSPA4P34932 840 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 MMP14P50281 582 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 KIAA2012Q0VF49 1180 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 NMIQ13287 307 aaPredicted RBP6.55□□□□□ -1.36
VPS41-211ENST00000466017 NECTIN1Q15223 517 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 ALX1Q15699 326 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 CWC27Q6UX04 472 aaKnown RBP6.55□□□□□ -1.36
VPS41-211ENST00000466017 KIAA1211Q6ZU35 1233 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 ASAP3Q8TDY4 903 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 SLC7A3Q8WY07 619 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 PMEPA1Q969W9 287 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 EDC3Q96F86 508 aaKnown RBP6.55□□□□□ -1.36
VPS41-211ENST00000466017 DNAJC2Q99543 621 aaKnown RBP6.55□□□□□ -1.36
VPS41-211ENST00000466017 LSG1Q9H089 658 aaKnown RBP6.55□□□□□ -1.36
VPS41-211ENST00000466017 NPHS2Q9NP85 383 aa6.55□□□□□ -1.36
VPS41-211ENST00000466017 PIH1D3Q9NQM4 214 aaKnown RBP6.55□□□□□ -1.36
VPS41-211ENST00000466017 DLEC1Q9Y238 1755 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 LTBP3Q9NS15 1303 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 A0A0G2JLW4 131 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 K7ELQ4 463 aaPredicted RBP6.54□□□□□ -1.36
VPS41-211ENST00000466017 LDHCP07864 332 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 PTPRAP18433 802 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 GNAT2P19087 354 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 MCCP23508 829 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 CD68P34810 354 aaPredicted RBP6.54□□□□□ -1.36
VPS41-211ENST00000466017 HDLBPQ00341 1268 aaKnown RBP6.54□□□□□ -1.36
VPS41-211ENST00000466017 DSC3Q14574 896 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 ZNF423Q2M1K9 1284 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 SLC9C2Q5TAH2 1124 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 STRIP1Q5VSL9 837 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 OSBP2Q969R2 916 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 SNX21Q969T3 373 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 FAM227BQ96M60 508 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 NACC1Q96RE7 527 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 KIF2CQ99661 725 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 RBCK1Q9BYM8 510 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 TM6SF1Q9BZW5 370 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 BHLHE41Q9C0J9 482 aaPredicted RBP6.54□□□□□ -1.36
VPS41-211ENST00000466017 BCL11AQ9H165 835 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 SLX4Q8IY92 1834 aa6.54□□□□□ -1.36
VPS41-211ENST00000466017 COL11A2P13942 1736 aaPredicted RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 CCDC171Q6TFL3 1326 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 A0A0D9SFI3 127 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 PATL2C9JE40 543 aaKnown RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 H3BRJ5 948 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 FRAT2O75474 233 aaPredicted RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 CTSBP07858 339 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 HSPD1P10809 573 aaKnown RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 EDN3P14138 238 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 PDE6AP16499 860 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 KLRK1P26718 216 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 NT5C2P49902 561 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 NLRP12P59046 1061 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 GSTO1P78417 241 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 PDE4CQ08493 712 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 DALRD3Q5D0E6 543 aaKnown RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 GIMAP6Q6P9H5 292 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 CCNJLQ8IV13 435 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 GLIS3Q8NEA6 775 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 TP53INP1Q96A56 240 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 CCDC74AQ96AQ1 378 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 NSUN4Q96CB9 384 aaKnown RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 STRBPQ96SI9 672 aaKnown RBP6.53□□□□□ -1.36
VPS41-211ENST00000466017 IL25Q9H293 177 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 LRP2BPQ9P2M1 347 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 CTNNA3Q9UI47 895 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 WWC3Q9ULE0 1092 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 DOCK2Q92608 1830 aa6.53□□□□□ -1.36
VPS41-211ENST00000466017 DUOX1Q9NRD9 1551 aa6.52□□□□□ -1.36
VPS41-211ENST00000466017 ZMYM6O95789 1325 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 ZNF532Q9HCE3 1301 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 LOC100996750A0A140TA64 210 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 DYRK3O43781 588 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 IDH1O75874 414 aaKnown RBP6.52□□□□□ -1.37
VPS41-211ENST00000466017 ECEL1O95672 775 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 LDHBP07195 334 aaKnown RBP6.52□□□□□ -1.37
VPS41-211ENST00000466017 PTH1RQ03431 593 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 RABEP1Q15276 862 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 TTLL5Q6EMB2 1281 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 NAA16Q6N069 864 aaPredicted RBP6.52□□□□□ -1.37
VPS41-211ENST00000466017 ZNF589Q86UQ0 364 aaPredicted RBP6.52□□□□□ -1.37
VPS41-211ENST00000466017 TMEM130Q8N3G9 435 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 BSNDQ8WZ55 320 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 CSRNP1Q96S65 589 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 KRTAP4-6Q9BYQ5 205 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 PUS7LQ9H0K6 701 aaKnown RBP6.52□□□□□ -1.37
VPS41-211ENST00000466017 ALDH8A1Q9H2A2 487 aaPredicted RBP6.52□□□□□ -1.37
VPS41-211ENST00000466017 AKTIPQ9H8T0 292 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 LIN7BQ9HAP6 207 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 RNF19AQ9NV58 838 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 KIAA1551Q9HCM1 1747 aa6.52□□□□□ -1.37
VPS41-211ENST00000466017 MAST3O60307 1309 aa6.51□□□□□ -1.37
VPS41-211ENST00000466017 MYH7P12883 1935 aa6.51□□□□□ -1.37
VPS41-211ENST00000466017 A0A096LPE4 126 aa6.51□□□□□ -1.37
VPS41-211ENST00000466017 GPR75-ASB3A0A0A6YYF3 556 aa6.51□□□□□ -1.37
VPS41-211ENST00000466017 A0A1W2PPZ6 126 aa6.51□□□□□ -1.37
VPS41-211ENST00000466017 GPAA1O43292 621 aa6.51□□□□□ -1.37
VPS41-211ENST00000466017 CPNE3O75131 537 aaKnown RBP6.51□□□□□ -1.37
VPS41-211ENST00000466017 BAG3O95817 575 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms