RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 KCNG1Q9UIX4 513 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 AOX1Q06278 1338 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 E2F6O75461 281 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 KRT5P13647 590 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 AP2B1P63010 937 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 PKP1Q13835 747 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 TAB2Q9NYJ8 693 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 LZTS1Q9Y250 596 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 ATP11BQ9Y2G3 1177 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 FAM13AO94988 1023 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 PECAM1P16284 738 aaPredicted RBP14.44□□□□□ -0.1
USP40-208ENST00000450966 SERPINB4P48594 390 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 CDC37L1Q7L3B6 337 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 DCPSQ96C86 337 aaKnown RBP14.44□□□□□ -0.1
USP40-208ENST00000450966 SPC25Q9HBM1 224 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 TRPC6Q9Y210 931 aa14.44□□□□□ -0.1
USP40-208ENST00000450966 ESRRAP11474 423 aaPredicted RBP14.43□□□□□ -0.1
USP40-208ENST00000450966 TRIM60Q495X7 471 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 FAM186BQ8IYM0 893 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 GCC2Q8IWJ2 1684 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 FAM200BP0CF97 657 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 RAP1GDS1P52306 607 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 MRPS9P82933 396 aaKnown RBP14.43□□□□□ -0.1
USP40-208ENST00000450966 ITIH3Q06033 890 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 ANO5Q75V66 913 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 LRGUKQ96M69 825 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 ADCY3O60266 1144 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 ZMYND10O75800 440 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 FAM173BQ6P4H8 233 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 DHX32Q7L7V1 743 aaKnown RBP14.43□□□□□ -0.1
USP40-208ENST00000450966 CCDC138Q96M89 665 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 COQ7Q99807 217 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 CHMP2BQ9UQN3 213 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 CHL1O00533 1208 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 RPS8P62241 208 aaKnown RBP14.43□□□□□ -0.1
USP40-208ENST00000450966 RILPL1Q5EBL4 403 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 PACS2Q86VP3 889 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 SESTD1Q86VW0 696 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 RUBCNQ92622 972 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 UNC45AQ9H3U1 944 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 BLMP54132 1417 aaPredicted RBP14.43□□□□□ -0.1
USP40-208ENST00000450966 MYO1FO00160 1098 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 RPS6KB1P23443 525 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 BEND3Q5T5X7 828 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 MCF2L2Q86YR7 1114 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 FAM81AQ8TBF8 368 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 ZNF473Q8WTR7 871 aaKnown RBP14.43□□□□□ -0.1
USP40-208ENST00000450966 DNAJC9Q8WXX5 260 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 SDCCAG3Q96C92 435 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 CLMNQ96JQ2 1002 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 AMFRQ9UKV5 643 aa14.43□□□□□ -0.1
USP40-208ENST00000450966 SSH2Q76I76 1423 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 WDR46O15213 610 aaKnown RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 SYF2O95926 243 aaKnown RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 MMEP08473 750 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 TRPC1P48995 793 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 ARHGAP4P98171 946 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 CWF19L2Q2TBE0 894 aaKnown RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 CLEC17AQ6ZS10 378 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 E9PMD0 336 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 KCNK3O14649 394 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 PPP1R37O75864 691 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 SASH1O94885 1247 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 ZRANB2O95218 330 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP40-208ENST00000450966 CUL1Q13616 776 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 CYB5D1Q6P9G0 228 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 ITFG2Q969R8 447 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 NDE1Q9NXR1 346 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 SNX14Q9Y5W7 946 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 PTPRTO14522 1441 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 EIF4E1BA6NMX2 242 aaKnown RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 DEAF1O75398 565 aaPredicted RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 FBLN1P23142 703 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 IL6STP40189 918 aaPredicted RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 COG1Q8WTW3 980 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 KIFC3Q9BVG8 833 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 CARD14Q9BXL6 1004 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 CARD9Q9H257 536 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 GCKRQ14397 625 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 ARHGAP27Q6ZUM4 889 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 BBOF1Q8ND07 529 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 TTLL11Q8NHH1 800 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 MRRFQ96E11 262 aaKnown RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 CATSPER2Q96P56 530 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 KRT12Q99456 494 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 LRRC2Q9BYS8 371 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 DLGAP2Q9P1A6 1054 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 KDM5AP29375 1690 aaKnown RBP14.42□□□□□ -0.1
USP40-208ENST00000450966 SYNMO15061 1565 aa14.42□□□□□ -0.1
USP40-208ENST00000450966 AHCYL1O43865 530 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 HNRNPCL1O60812 293 aaKnown RBP14.41□□□□□ -0.1
USP40-208ENST00000450966 VCAM1P19320 739 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 KRT2P35908 639 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 CSGALNACT2Q8N6G5 542 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 NOD2Q9HC29 1040 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 IL1RAPL1Q9NZN1 696 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 TRAF3IP3Q9Y228 551 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 GOLGA8QA0A0J9YX86 632 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 GOLGA8OA6NCC3 632 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 GOLGA8NF8WBI6 632 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms