RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 STK36Q9NRP7 1315 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 DNAJC25-GNG10A0A024R161 153 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 B4DLN1 442 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 CCDC192P0DO97 292 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 ADORA2AP29274 412 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 CTGFP29279 349 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 MRPL12P52815 198 aaKnown RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 SSRP1Q08945 709 aaKnown RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 CAMK4Q16566 473 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 PFKFB3Q16875 520 aaPredicted RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 SLC35G1Q2M3R5 365 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 HS1BP3Q53T59 392 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 WDR78Q5VTH9 848 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 MCTP2Q6DN12 878 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 BRAPQ7Z569 592 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 DPP9Q86TI2 863 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 HOMER1Q86YM7 354 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 SLAIN1Q8ND83 568 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 WASF1Q92558 559 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 MPHOSPH6Q99547 160 aaKnown RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 APBA2Q99767 749 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 ARHGAP39Q9C0H5 1083 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 TNMDQ9H2S6 317 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 CLSTN2Q9H4D0 955 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 PIK3CDO00329 1044 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 NR1I2O75469 434 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 DEXIO95424 95 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 CAPN2P17655 700 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 FLT3LGP49771 235 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 OLFML2BQ68BL8 750 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 RBM43Q6ZSC3 357 aaKnown RBP11.63□□□□□ -0.55
VPS53-202ENST00000389040 RAET1EQ8TD07 263 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 CLEC4DQ8WXI8 215 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 ALG1Q9BT22 464 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 BARHL2Q9NY43 387 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 RTEL1Q9NZ71 1219 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 NRBP1Q9UHY1 535 aa11.63□□□□□ -0.55
VPS53-202ENST00000389040 PEX10O60683 326 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 SCG2P13521 617 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 XBP1P17861 261 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 SNAP25P60880 206 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 PRKCZQ05513 592 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 GALNT17Q6IS24 598 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 CCDC82Q8N4S0 544 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 DNERQ8NFT8 737 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 PHKBQ93100 1093 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 A1CFQ9NQ94 594 aaKnown RBP11.62□□□□□ -0.55
VPS53-202ENST00000389040 GJB4Q9NTQ9 266 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 CYP39A1Q9NYL5 469 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 ADD3Q9UEY8 706 aaKnown RBP11.62□□□□□ -0.55
VPS53-202ENST00000389040 ESYT2A0FGR8 921 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 PPP1R11O60927 126 aaPredicted RBP11.62□□□□□ -0.55
VPS53-202ENST00000389040 CLCN1P35523 988 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 HSD17B4P51659 736 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 ZNF792Q3KQV3 632 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 USH1GQ495M9 461 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 MAMDC4Q6UXC1 1216 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 RNF207Q6ZRF8 634 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 CMTR1Q8N1G2 835 aaKnown RBP11.62□□□□□ -0.55
VPS53-202ENST00000389040 CCDC148Q8NFR7 591 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 HOMER2Q9NSB8 354 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 POLR3EQ9NVU0 708 aa11.62□□□□□ -0.55
VPS53-202ENST00000389040 KIF28PB7ZC32 967 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 POTEB2H3BUK9 544 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 GCOM1H8Y6P7 765 aaPredicted RBP11.61□□□□□ -0.55
VPS53-202ENST00000389040 POLR2MP0CAP2 368 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 GNA11P29992 359 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 ME1P48163 572 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 TYRO3Q06418 890 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 MUM1L1Q5H9M0 696 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 MYSM1Q5VVJ2 828 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 IFNLR1Q8IU57 520 aaPredicted RBP11.61□□□□□ -0.55
VPS53-202ENST00000389040 FAM133AQ8N9E0 248 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 CUL5Q93034 780 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 AIFM3Q96NN9 605 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 SLC26A6Q9BXS9 759 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 PSTPIP2Q9H939 334 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 PARP14Q460N5 1801 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 SYNGAP1Q96PV0 1343 aa11.61□□□□□ -0.55
VPS53-202ENST00000389040 ASB14A6NK59 587 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 NFIBO00712 420 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 IGHA2P01877 340 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 RPS6P62753 249 aaKnown RBP11.6□□□□□ -0.55
VPS53-202ENST00000389040 KRT40Q6A162 431 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 CCDC73Q6ZRK6 1079 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 HEATR3Q7Z4Q2 680 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 ZSCAN30Q86W11 494 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 CKAP2LQ8IYA6 745 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 KCNG4Q8TDN1 519 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 IWS1Q96ST2 819 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 ZMYND12Q9H0C1 365 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 STXBP3O00186 592 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 ADCY3O60266 1144 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 COBLO75128 1261 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 YEATS4O95619 227 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 FOSP01100 380 aaPredicted RBP11.6□□□□□ -0.55
VPS53-202ENST00000389040 HMGCRP04035 888 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 GRK4P32298 578 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 CAP1Q01518 475 aa11.6□□□□□ -0.55
VPS53-202ENST00000389040 BAATQ14032 418 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms