RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 SH3RF1Q7Z6J0 888 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 CCDC197Q8NCU1 140 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 PHC3Q8NDX5 983 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 TMEM165Q9HC07 324 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 DNAAF2Q9NVR5 837 aaKnown RBP10.54□□□□□ -0.72
SF3A3-201ENST00000373019 ANAPC4Q9UJX5 808 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 CTNND2Q9UQB3 1225 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 LRRC42Q9Y546 428 aa10.54□□□□□ -0.72
SF3A3-201ENST00000373019 GNAT3A8MTJ3 354 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 PDLIM1O00151 329 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 SETSIPP0DME0 302 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 ALDH1B1P30837 517 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 NCALDP61601 193 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 TAF11Q15544 211 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 CCDC96Q2M329 555 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 CCDC57Q2TAC2 916 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 PABPC1LQ4VXU2 614 aaKnown RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 LRIG3Q6UXM1 1119 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 SDCCAG8Q86SQ7 713 aaPredicted RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 IFT43Q96FT9 208 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 CHMP6Q96FZ7 201 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 SUDS3Q9H7L9 328 aaPredicted RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 MLXIPQ9HAP2 919 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 AGPAT5Q9NUQ2 364 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 LRRD1A4D1F6 860 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 KRT16P08779 473 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 AFMP43652 599 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 MXRA7P84157 204 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 TMEM62Q0P6H9 643 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 SF3A3Q12874 501 aaKnown RBP eCLIP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 RRP12Q5JTH9 1297 aaKnown RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 ERMARDQ5T6L9 678 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 RNF220Q5VTB9 566 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 KANK3Q6NY19 840 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 IRF2BP1Q8IU81 584 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 WHAMMQ8TF30 809 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 HAUS7Q99871 368 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 MMADHCQ9H3L0 296 aaPredicted RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 PRDM16Q9HAZ2 1276 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 LRWD1Q9UFC0 647 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 AKAP12Q02952 1782 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 MYH1P12882 1939 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 NCK2O43639 380 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 LGR5O75473 907 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 LBRQ14739 615 aaKnown RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 SGSM1Q2NKQ1 1148 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 FOXB2Q5VYV0 432 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 KRT26Q7Z3Y9 468 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 MDM1Q8TC05 714 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 ZNF507Q8TCN5 953 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 RAPGEF4Q8WZA2 1011 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 BICD1Q96G01 975 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 TTYH3Q9C0H2 523 aa10.53□□□□□ -0.72
SF3A3-201ENST00000373019 ZMYND8Q9ULU4 1186 aaPredicted RBP10.53□□□□□ -0.72
SF3A3-201ENST00000373019 COL16A1Q07092 1604 aaPredicted RBP10.52□□□□□ -0.72
SF3A3-201ENST00000373019 NHSL1Q5SYE7 1610 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 KCNJ18B7U540 433 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 MOCS3O95396 460 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 TCP1P17987 556 aaKnown RBP10.52□□□□□ -0.72
SF3A3-201ENST00000373019 GNAZP19086 355 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 KCNJ12Q14500 433 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 TRIM68Q6AZZ1 485 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 MB21D2Q8IYB1 491 aaPredicted RBP10.52□□□□□ -0.72
SF3A3-201ENST00000373019 KBTBD3Q8NAB2 608 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 PHKBQ93100 1093 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 PAGE5Q96GU1 130 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 GOPCQ9HD26 462 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 ABCF3Q9NUQ8 709 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 TSKSQ9UJT2 592 aa10.52□□□□□ -0.72
SF3A3-201ENST00000373019 MYH7BA7E2Y1 1941 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 M0R2C6 588 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 SMAPO00193 183 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 ABLIM1O14639 778 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 FOXP2O15409 715 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 PRC1O43663 620 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 BIRC3Q13489 604 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 ITIH4Q14624 930 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 TRPM8Q7Z2W7 1104 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 MB21D1Q8N884 522 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 ZNF579Q8NAF0 562 aaKnown RBP10.52□□□□□ -0.73
SF3A3-201ENST00000373019 KCNV2Q8TDN2 545 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 TLR10Q9BXR5 811 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 MTFR1LQ9H019 292 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 SALL4Q9UJQ4 1053 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 MAP3K2Q9Y2U5 619 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 HYOU1Q9Y4L1 999 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 GOLGA6L10A6NI86 522 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 IGF2BP3O00425 579 aaKnown RBP eCLIP10.52□□□□□ -0.73
SF3A3-201ENST00000373019 VIMP08670 466 aaKnown RBP10.52□□□□□ -0.73
SF3A3-201ENST00000373019 KIF5AQ12840 1032 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 NKX2-3Q8TAU0 364 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 MOV10L1Q9BXT6 1211 aaKnown RBP10.52□□□□□ -0.73
SF3A3-201ENST00000373019 CSRNP2Q9H175 543 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 SH2D4AQ9H788 454 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 HELLSQ9NRZ9 838 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 NOVA2Q9UNW9 492 aaKnown RBP10.52□□□□□ -0.73
SF3A3-201ENST00000373019 PHF24Q9UPV7 400 aa10.52□□□□□ -0.73
SF3A3-201ENST00000373019 USP31Q70CQ4 1352 aa10.51□□□□□ -0.73
SF3A3-201ENST00000373019 KIF5BP33176 963 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms