RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TBC1D8BQ0IIM8 1120 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SNW1Q13573 536 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 CCDC85BQ15834 202 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 GRIK5Q16478 980 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 C1orf141Q5JVX7 400 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 LMBR1LQ6UX01 489 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 RUFY4Q6ZNE9 571 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 UBE3BQ7Z3V4 1068 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 FCHSD1Q86WN1 690 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 MAP4K3Q8IVH8 894 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SVOPQ8N4V2 548 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 TRPM7Q96QT4 1865 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 RIOK1Q9BRS2 568 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 ZC3H12CQ9C0D7 883 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 EHD4Q9H223 541 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 TNKS2Q9H2K2 1166 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 LIN7BQ9HAP6 207 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 NEUROD4Q9HD90 331 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 INPP5FQ9Y2H2 1132 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SPATA31A6Q5VVP1 1343 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 ZNF236Q9UL36 1845 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 CDC14CA4D256 554 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 FAM221BA6H8Z2 402 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 UBE2Q2LH0YL09 131 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 EYA2O00167 538 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 DLL1O00548 723 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 TLR3O15455 904 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 PF4P02776 101 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 PSAPP07602 524 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 HSPD1P10809 573 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 MX2P20592 715 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 TEFQ10587 303 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SF3B3Q15393 1217 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 EFHC2Q5JST6 749 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 SYT9Q86SS6 491 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 KBTBD3Q8NAB2 608 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 PHC3Q8NDX5 983 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 EDARADDQ8WWZ3 215 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 EVI5LQ96CN4 794 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 PPP1R9BQ96SB3 815 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 GMLQ99445 158 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 LACRTQ9GZZ8 138 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 CCDC8Q9H0W5 538 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 SUV39H2Q9H5I1 410 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 RRAGDQ9NQL2 400 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 FAM8A1Q9UBU6 413 aa2.79□□□□□ -1.96
VPS54-202ENST00000354504 FNDC3AQ9Y2H6 1198 aaKnown RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 COL4A4P53420 1690 aaPredicted RBP2.79□□□□□ -1.96
VPS54-202ENST00000354504 FAM237AA0A1B0GTK4 181 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 C9orf172C9J069 976 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 SURF6O75683 361 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 CPB1P15086 417 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 PCSK2P16519 638 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 RPS6KB1P23443 525 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 ANP32AP39687 249 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 CABP4P57796 275 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 TIMM10P62072 90 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 SCRN1Q12765 414 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 RESTQ13127 1097 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 CCINQ13939 588 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 RPS26P11Q5JNZ5 115 aaPredicted RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 PERM1Q5SV97 790 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 C15orf52Q6ZUT6 534 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 HS2ST1Q7LGA3 356 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 TXNRD3Q86VQ6 643 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 TBC1D10CQ8IV04 446 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 PGBD3Q8N328 593 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 ENGASEQ8NFI3 743 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 RAPGEF4Q8WZA2 1011 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 NXPE3Q969Y0 559 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 FAM89AQ96GI7 184 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 GPATCH3Q96I76 525 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 PGBD1Q96JS3 809 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 STK31Q9BXU1 1019 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 CCSER2Q9H7U1 834 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 PRDM11Q9NQV5 511 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 SEC31BQ9NQW1 1179 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 CHMP5Q9NZZ3 219 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 TTF2Q9UNY4 1162 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 KCNH4Q9UQ05 1017 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 WDR19Q8NEZ3 1342 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 DMDP11532 3685 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 LOC102724428A0A0B4J2F2 783 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 A0A1B0GUL7 405 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 RANBP6O60518 1105 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 GLRX3O76003 335 aaKnown RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 F13A1P00488 732 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 ADH6P28332 368 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 ADD2P35612 726 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 SIK1P57059 783 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 TBC1D9BQ66K14 1250 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 CYB5R4Q7L1T6 521 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 NCAPG2Q86XI2 1143 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 IGDCC4Q8TDY8 1250 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 LRRC15Q8TF66 581 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 ZNF296Q8WUU4 475 aaPredicted RBP2.78□□□□□ -1.96
VPS54-202ENST00000354504 GAL3ST3Q96A11 431 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 DSCC1Q9BVC3 393 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 LGR4Q9BXB1 951 aa2.78□□□□□ -1.96
VPS54-202ENST00000354504 CHMP4BQ9H444 224 aaKnown RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms