RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 B4GALT4O60513 344 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 CSF2RAP15509 400 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 CYP2C18P33260 490 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 TMEM67Q5HYA8 995 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 ARHGEF16Q5VV41 709 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 FAM109BQ6ICB4 259 aaPredicted RBP22.7■■□□□ 1.22
LIME1-201ENST00000309546 SEPT14Q6ZU15 432 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 RMDN3Q96TC7 470 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 MAF1Q9H063 256 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 STXBP5LQ9Y2K9 1186 aa22.7■■□□□ 1.22
LIME1-201ENST00000309546 ZBTB5O15062 677 aa22.69■■□□□ 1.22
LIME1-201ENST00000309546 ARIH2O95376 493 aa22.69■■□□□ 1.22
LIME1-201ENST00000309546 EIF2AK2P19525 551 aaKnown RBP22.69■■□□□ 1.22
LIME1-201ENST00000309546 SMAD3P84022 425 aaKnown RBP22.69■■□□□ 1.22
LIME1-201ENST00000309546 PURAQ00577 322 aaKnown RBP22.69■■□□□ 1.22
LIME1-201ENST00000309546 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.69■■□□□ 1.228e-8■■■□□ 15.1
LIME1-201ENST00000309546 TRPV6Q9H1D0 765 aa22.69■■□□□ 1.22
LIME1-201ENST00000309546 HIPK3Q9H422 1215 aa22.69■■□□□ 1.22
LIME1-201ENST00000309546 LAMA2P24043 3122 aaKnown RBP22.68■■□□□ 1.22
LIME1-201ENST00000309546 PPP1R11O60927 126 aaPredicted RBP22.68■■□□□ 1.22
LIME1-201ENST00000309546 ACRP10323 421 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 ANTXR2P58335 489 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 SKAP1Q86WV1 359 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 MB21D2Q8IYB1 491 aaPredicted RBP22.68■■□□□ 1.22
LIME1-201ENST00000309546 MTMR8Q96EF0 704 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 GUCD1Q96NT3 240 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 PIGSQ96S52 555 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 MTG1Q9BT17 334 aaPredicted RBP22.68■■□□□ 1.22
LIME1-201ENST00000309546 SEZ6LQ9BYH1 1024 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 PCDHA1Q9Y5I3 950 aa22.68■■□□□ 1.22
LIME1-201ENST00000309546 SCN10AQ9Y5Y9 1956 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 UMODL1Q5DID0 1318 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 STXBP2Q15833 593 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 SLC35G1Q2M3R5 365 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 FAM47CQ5HY64 1035 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 CATIPQ7Z7H3 387 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 IWS1Q96ST2 819 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 ALDH8A1Q9H2A2 487 aaPredicted RBP22.67■■□□□ 1.22
LIME1-201ENST00000309546 PXMP2Q9NR77 195 aa22.67■■□□□ 1.22
LIME1-201ENST00000309546 OPLAHO14841 1288 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 CCL23P55773 120 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 CHMP4BP1P59074 171 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 TROAPQ12815 778 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 SLC17A8Q8NDX2 589 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 PPP1R13LQ8WUF5 828 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 PIBF1Q8WXW3 757 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 ESYT1Q9BSJ8 1104 aa22.66■■□□□ 1.22
LIME1-201ENST00000309546 LSG1Q9H089 658 aaKnown RBP22.66■■□□□ 1.22
LIME1-201ENST00000309546 TRMT13Q9NUP7 481 aaKnown RBP22.66■■□□□ 1.22
LIME1-201ENST00000309546 HOXA13P31271 388 aaPredicted RBP22.65■■□□□ 1.22
LIME1-201ENST00000309546 HSD17B4P51659 736 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 LY6KQ17RY6 165 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 TMEM240Q5SV17 173 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 PSRC1Q6PGN9 363 aaPredicted RBP22.65■■□□□ 1.22
LIME1-201ENST00000309546 CASC1Q6TDU7 716 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 C16orf59Q7L2K0 433 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 MYL10Q9BUA6 226 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 NOC4LQ9BVI4 516 aaKnown RBP22.65■■□□□ 1.22
LIME1-201ENST00000309546 RIOX1Q9H6W3 641 aa22.65■■□□□ 1.22
LIME1-201ENST00000309546 COL6A3P12111 3177 aa22.64■■□□□ 1.22
LIME1-201ENST00000309546 A6NJR5 290 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 PRC1O43663 620 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 CYTH3O43739 400 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 GH1P01241 217 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 NR3C2P08235 984 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 MYCLP12524 364 aaPredicted RBP22.64■■□□□ 1.21
LIME1-201ENST00000309546 CCDC62Q6P9F0 684 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 ZNF365Q70YC5 407 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 CENPQQ7L2Z9 268 aaPredicted RBP22.64■■□□□ 1.21
LIME1-201ENST00000309546 IGDCC4Q8TDY8 1250 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 AFG1LQ8WV93 481 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 IL23AQ9NPF7 189 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 ANO2Q9NQ90 1003 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 MYH7BA7E2Y1 1941 aa22.64■■□□□ 1.21
LIME1-201ENST00000309546 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.63■■□□□ 1.21
LIME1-201ENST00000309546 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.63■■□□□ 1.21
LIME1-201ENST00000309546 KPNA6O60684 536 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 CYP2C9P11712 490 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 TRAF1Q13077 416 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 NBPF20Q3BBV1 942 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 NFXL1Q6ZNB6 911 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 ZNF654Q8IZM8 581 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 CTCFLQ8NI51 663 aaPredicted RBP22.63■■□□□ 1.21
LIME1-201ENST00000309546 WNT8AQ9H1J5 351 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 SEMA6BQ9H3T3 888 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 LY9Q9HBG7 655 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 MRVI1Q9Y6F6 885 aa22.63■■□□□ 1.21
LIME1-201ENST00000309546 PNMA6FA0A0J9YX94 578 aa22.62■■□□□ 1.21
LIME1-201ENST00000309546 SLC27A2O14975 620 aa22.62■■□□□ 1.21
LIME1-201ENST00000309546 EIF3JO75822 258 aaKnown RBP22.62■■□□□ 1.21
LIME1-201ENST00000309546 MMP3P08254 477 aa22.62■■□□□ 1.21
LIME1-201ENST00000309546 SUPT20HL2P0C7V6 817 aa22.62■■□□□ 1.21
LIME1-201ENST00000309546 GHRHRQ02643 423 aa22.62■■□□□ 1.21
LIME1-201ENST00000309546 ARHGAP1Q07960 439 aa22.62■■□□□ 1.21
LIME1-201ENST00000309546 TTYH1Q9H313 450 aaPredicted RBP22.62■■□□□ 1.21
LIME1-201ENST00000309546 MAP3K20Q9NYL2 800 aaKnown RBP22.62■■□□□ 1.21
LIME1-201ENST00000309546 GCOM1H8Y6P7 765 aaPredicted RBP22.61■■□□□ 1.21
LIME1-201ENST00000309546 DDAH1O94760 285 aa22.61■■□□□ 1.21
LIME1-201ENST00000309546 POLR2MP0CAP2 368 aa22.61■■□□□ 1.21
LIME1-201ENST00000309546 MCM5P33992 734 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms