RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 LMTK2Q8IWU2 1503 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 FERP16591 822 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 LRRC63Q05C16 580 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 BIRC3Q13489 604 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 NR1I3Q14994 352 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 NBPF9Q3BBW0 867 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 AP1ARQ63HQ0 302 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 ADAT2Q7Z6V5 191 aaKnown RBP21.13■□□□□ 0.97
USP48-201ENST00000308271 TGFBRAP1Q8WUH2 860 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 P3H4Q92791 437 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 KLHL29Q96CT2 875 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 CCDC87Q9NVE4 849 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 CCDC188H7C350 402 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 ZNF609O15014 1411 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 LY9Q9HBG7 655 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 LMNB1P20700 586 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 TRIM68Q6AZZ1 485 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 GRK7Q8WTQ7 553 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 STAG1Q8WVM7 1258 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 PLAAQ9Y263 795 aa21.13■□□□□ 0.97
USP48-201ENST00000308271 PEX19P40855 299 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 MCAMP43121 646 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 PRCPP42785 496 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 FRMD3A2A2Y4 597 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 PLCG1P19174 1290 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 PHLDB2Q86SQ0 1253 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 SMCR8Q8TEV9 937 aaPredicted RBP21.12■□□□□ 0.97
USP48-201ENST00000308271 FUT8Q9BYC5 575 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 ITIH6Q6UXX5 1313 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 ATP1A1P05023 1023 aaKnown RBP21.12■□□□□ 0.97
USP48-201ENST00000308271 FMR1Q06787 632 aaKnown RBP eCLIP21.12■□□□□ 0.971e-6■■□□□ 13.3
USP48-201ENST00000308271 CCDC13Q8IYE1 715 aa21.12■□□□□ 0.97
USP48-201ENST00000308271 MAGOHBQ96A72 148 aaKnown RBP21.12■□□□□ 0.97
USP48-201ENST00000308271 CHMP2AO43633 222 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 MSANTD4Q8NCY6 345 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 NEK9Q8TD19 979 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 OSBPL9Q96SU4 736 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 TAF6LQ9Y6J9 622 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 MRPS25P82663 173 aaKnown RBP21.11■□□□□ 0.97
USP48-201ENST00000308271 PSMD2Q13200 908 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 SEMA3FQ13275 785 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 PHLDB3Q6NSJ2 640 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 ADD3Q9UEY8 706 aaKnown RBP21.11■□□□□ 0.97
USP48-201ENST00000308271 LIMA1Q9UHB6 759 aaKnown RBP21.11■□□□□ 0.97
USP48-201ENST00000308271 FBXO2Q9UK22 296 aaPredicted RBP21.11■□□□□ 0.97
USP48-201ENST00000308271 THAP12O43422 761 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 HSPA6P17066 643 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 CHRNDQ07001 517 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 ZC3H12CQ9C0D7 883 aaKnown RBP21.11■□□□□ 0.97
USP48-201ENST00000308271 EXOC7Q9UPT5 735 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 PLTPP55058 493 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 ALX1Q15699 326 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 RAD9BQ6WBX8 426 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 CCHCR1Q8TD31 782 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 FMO2Q99518 471 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 NCAPGQ9BPX3 1015 aa21.11■□□□□ 0.97
USP48-201ENST00000308271 NEDD4P46934 1319 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 LRRD1A4D1F6 860 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 CTDNEP1O95476 244 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 TRIM49BA6NDI0 452 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 GOLGA8HP0CJ92 632 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 NR2F2P24468 414 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 SMTNP53814 917 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 ERBB3P21860 1342 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 SLC1A4P43007 532 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 PAXIP1Q6ZW49 1069 aaPredicted RBP21.1■□□□□ 0.97
USP48-201ENST00000308271 PAF1Q8N7H5 531 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 FAM133AQ8N9E0 248 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 OXER1Q8TDS5 423 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 GBP5Q96PP8 586 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 FNBP1Q96RU3 617 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 VCX3BQ9H321 246 aa21.1■□□□□ 0.97
USP48-201ENST00000308271 HEG1Q9ULI3 1381 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 SLMAPQ14BN4 828 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 DDX25Q9UHL0 483 aaKnown RBP21.09■□□□□ 0.97
USP48-201ENST00000308271 USP31Q70CQ4 1352 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 FDPSP14324 419 aaKnown RBP21.09■□□□□ 0.97
USP48-201ENST00000308271 ADCY8P40145 1251 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 RABL6Q3YEC7 729 aaPredicted RBP21.09■□□□□ 0.97
USP48-201ENST00000308271 VPS37BQ9H9H4 285 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 CAPN11Q9UMQ6 739 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 AGTPBP1Q9UPW5 1226 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 BBOF1Q8ND07 529 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 TCHPQ9BT92 498 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 TXNDC16Q9P2K2 825 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 TOM1O60784 492 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 RBBP5Q15291 538 aaKnown RBP21.09■□□□□ 0.97
USP48-201ENST00000308271 TMTC3Q6ZXV5 915 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 SLFN12Q8IYM2 578 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 ANKARQ7Z5J8 1434 aa21.09■□□□□ 0.97
USP48-201ENST00000308271 GMNCA6NCL1 334 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 RPS8P62241 208 aaKnown RBP21.08■□□□□ 0.97
USP48-201ENST00000308271 SEPT2Q15019 361 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 LRRC41Q15345 812 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 SPATA4Q8NEY3 305 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.08■□□□□ 0.97
USP48-201ENST00000308271 MMS19Q96T76 1030 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 ADAMTS1Q9UHI8 967 aa21.08■□□□□ 0.97
USP48-201ENST00000308271 AFPP02771 609 aaKnown RBP21.08■□□□□ 0.97
USP48-201ENST00000308271 ELOA2Q8IYF1 753 aaPredicted RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms