RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 OTOFQ9HC10 1997 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 TRIM75PA6NK02 468 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 GIPC2Q8TF65 315 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 ARHGEF3Q9NR81 526 aa12.11□□□□□ -0.47
HDGFL3-201ENST00000299633 RIOK1Q9BRS2 568 aaKnown RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 ZBED2Q9BTP6 218 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 RHBDL2Q9NX52 303 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 URB2Q14146 1524 aaKnown RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CREB3L3Q68CJ9 461 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 TADA2BQ86TJ2 420 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 FBXO31Q5XUX0 539 aaPredicted RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CDR2LQ86X02 465 aaPredicted RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CATSPER1Q8NEC5 780 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 QKIQ96PU8 341 aaKnown RBP eCLIP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 NUP160Q12769 1436 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 TBC1D8BQ0IIM8 1120 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CNGA2Q16280 664 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 SYBUQ9NX95 663 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 PA2G4Q9UQ80 394 aaKnown RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 INAQ16352 499 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 ABHD8Q96I13 439 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 NUP214P35658 2090 aaPredicted RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 KCTD16Q68DU8 428 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 EPAS1Q99814 870 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 KRT17Q04695 432 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CTTNQ14247 550 aaKnown RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CCDC142Q17RM4 750 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CNBD2Q96M20 576 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 COL17A1Q9UMD9 1497 aaPredicted RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 GNAQP50148 359 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 PLIN5Q00G26 463 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 KRT74Q7RTS7 529 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 PLIN2Q99541 437 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 ECM2O94769 699 aaPredicted RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 LDHAL6AQ6ZMR3 332 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 LRRC49Q8IUZ0 686 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 SRRM1Q8IYB3 904 aaKnown RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 RTL3Q8N8U3 475 aaKnown RBP12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 SMYD3Q9H7B4 428 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 NDE1Q9NXR1 346 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 RAB20Q9NX57 234 aa12.1□□□□□ -0.47
HDGFL3-201ENST00000299633 CDKL2Q92772 493 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 C19orf60Q96EN9 201 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 NRBP1Q9UHY1 535 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 STX8Q9UNK0 236 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 GRM8O00222 908 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 PSMC6P62333 389 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 TRIML1Q8N9V2 468 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 CRNKL1Q9BZJ0 848 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 SLC4A4Q9Y6R1 1079 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 PASKQ96RG2 1323 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 POLR1AO95602 1720 aaPredicted RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 CYLC2Q14093 348 aaPredicted RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 ANAPC5Q9UJX4 755 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 EIF4E1BA6NMX2 242 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 ADKP55263 362 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 CNGA3Q16281 694 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 C4orf50Q6ZRC1 276 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 KLC3Q6P597 504 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 ANKRD13DQ6ZTN6 518 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 RAD21L1Q9H4I0 556 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 NSFP46459 744 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 SLF1Q9BQI6 1058 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 CCDC90BQ9GZT6 254 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 FOXO3O43524 673 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 B4GALNT2Q8NHY0 566 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 GDAP1Q8TB36 358 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 EIF3CQ99613 913 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 MYO1CO00159 1063 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 STXBP3O00186 592 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 RINT1Q6NUQ1 792 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 SV2BQ7L1I2 683 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 CATSPER3Q86XQ3 398 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 NPHP3Q7Z494 1330 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 FBXW4P57775 412 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 NDUFA5Q16718 116 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 TAGAPQ8N103 731 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 THAP11Q96EK4 314 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 IQSEC3Q9UPP2 1182 aaPredicted RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 CDC40O60508 579 aaKnown RBP eCLIP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 OATP04181 439 aa12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 KPNA2P52292 529 aaKnown RBP12.09□□□□□ -0.47
HDGFL3-201ENST00000299633 SOS1Q07889 1333 aaPredicted RBP12.08□□□□□ -0.47
HDGFL3-201ENST00000299633 GOLGA8MH3BSY2 632 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 HSPA1AP0DMV8 641 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 HSPA1BP0DMV9 641 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 XAGE3Q8WTP9 111 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 TMEM245Q9H330 911 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 PIK3C2GO75747 1445 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 ZFYVE9O95405 1425 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 RIMS2Q9UQ26 1411 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 CHUKO15111 745 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 PATL1Q86TB9 770 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 CDC5LQ99459 802 aaKnown RBP12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 ZMYND10O75800 440 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 IFNA8P32881 189 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 LVRNQ6Q4G3 990 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 BTNL9Q6UXG8 535 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 TMTC2Q8N394 836 aa12.08□□□□□ -0.48
HDGFL3-201ENST00000299633 STAMBPL1Q96FJ0 436 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms