RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 HESX1Q9UBX0 185 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 MECOMQ03112 1051 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 FLAD1Q8NFF5 587 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 TXLNGQ9NUQ3 528 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 COPG1Q9Y678 874 aaKnown RBP13.09□□□□□ -0.31
PCF11-201ENST00000298281 EDC4Q6P2E9 1401 aaKnown RBP13.09□□□□□ -0.31
PCF11-201ENST00000298281 DDAH1O94760 285 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 OCRLQ01968 901 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 LONRF2Q1L5Z9 754 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 RRAGAQ7L523 313 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 DYMQ7RTS9 669 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 GPIHBP1Q8IV16 184 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 TMOD1P28289 359 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 LARSQ9P2J5 1176 aaKnown RBP13.09□□□□□ -0.31
PCF11-201ENST00000298281 CDKL2Q92772 493 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 OSBPL10Q9BXB5 764 aa13.09□□□□□ -0.31
PCF11-201ENST00000298281 PRDM5Q9NQX1 630 aaPredicted RBP13.09□□□□□ -0.31
PCF11-201ENST00000298281 FBXO2Q9UK22 296 aaPredicted RBP13.09□□□□□ -0.31
PCF11-201ENST00000298281 ARHGEF10O15013 1369 aa13.08□□□□□ -0.31
PCF11-201ENST00000298281 KRT7P08729 469 aa13.08□□□□□ -0.31
PCF11-201ENST00000298281 GCKP35557 465 aa13.08□□□□□ -0.31
PCF11-201ENST00000298281 YWHAHQ04917 246 aaPredicted RBP13.08□□□□□ -0.31
PCF11-201ENST00000298281 ART3Q13508 389 aa13.08□□□□□ -0.31
PCF11-201ENST00000298281 STAG1Q8WVM7 1258 aa13.08□□□□□ -0.31
PCF11-201ENST00000298281 PALMDQ9NP74 551 aa13.08□□□□□ -0.31
PCF11-201ENST00000298281 ARMCX3Q9UH62 379 aaPredicted RBP13.08□□□□□ -0.31
PCF11-201ENST00000298281 ABCC10Q5T3U5 1492 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 NBNO60934 754 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 ANGPT1Q15389 498 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 CAPN11Q9UMQ6 739 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 SCINQ9Y6U3 715 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 SMCO2A6NFE2 343 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 EIF3CLB5ME19 914 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 EEF1GP26641 437 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 TFAP4Q01664 338 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 ZNF274Q96GC6 653 aaPredicted RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 EIF3CQ99613 913 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 SLC52A2Q9HAB3 445 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 MAGEF1Q9HAY2 307 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 RGL1Q9NZL6 768 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 KIF24Q5T7B8 1368 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 ADALQ6DHV7 355 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 PATL1Q86TB9 770 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 TPH2Q8IWU9 490 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 TESPA1A2RU30 521 aaPredicted RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 XPOTO43592 962 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 KRT8P05787 483 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 U2AF2P26368 475 aaKnown RBP eCLIP13.08□□□□□ -0.325e-7■■■■□ 22.4
PCF11-201ENST00000298281 NBPF20Q3BBV1 942 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 PPP1R2P3Q6NXS1 205 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 NBPF10Q6P3W6 841 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 C2CD5Q86YS7 1000 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 ZNF532Q9HCE3 1301 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 H7C0C1 242 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 CREB3O43889 395 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 APOA4P06727 396 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 TCP1P17987 556 aaKnown RBP13.08□□□□□ -0.32
PCF11-201ENST00000298281 ABCD1P33897 745 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 ADCY8P40145 1251 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 PEX19P40855 299 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 ATP5OP48047 213 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 BPIFB4P59827 614 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.08□□□□□ -0.323e-13■□□□□ 8.5
PCF11-201ENST00000298281 PCDHA12Q9UN75 941 aa13.08□□□□□ -0.32
PCF11-201ENST00000298281 LIG4P49917 911 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 PLEKHM3Q6ZWE6 761 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 EFCAB13Q8IY85 973 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 FAM81BQ96LP2 452 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 NCOA5Q9HCD5 579 aaKnown RBP13.07□□□□□ -0.32
PCF11-201ENST00000298281 SLC4A7Q9Y6M7 1214 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 LMTK3Q96Q04 1460 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 SOS2Q07890 1332 aaPredicted RBP13.07□□□□□ -0.32
PCF11-201ENST00000298281 THAP12O43422 761 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 ATP5JP18859 108 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 SLC9A1P19634 815 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 LIG3P49916 1009 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 TRAPPC8Q9Y2L5 1435 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 M0R2C6 588 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 GCKRQ14397 625 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 ELMOD1Q8N336 334 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 RAD18Q9NS91 495 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 SELENONQ9NZV5 590 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 INPP5FQ9Y2H2 1132 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 COL4A3BPQ9Y5P4 624 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 RLBP1P12271 317 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 ANO4Q32M45 955 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.07□□□□□ -0.32
PCF11-201ENST00000298281 A0A1W2PP64 1363 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 CHCHD3Q9NX63 227 aaKnown RBP13.07□□□□□ -0.32
PCF11-201ENST00000298281 AKT3Q9Y243 479 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 NPM3O75607 178 aaKnown RBP13.07□□□□□ -0.32
PCF11-201ENST00000298281 PRDM1O75626 825 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 CCDC159P0C7I6 412 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 PIK3CAP42336 1068 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 KRT27Q7Z3Y8 459 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 PHACTR3Q96KR7 559 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 SLF1Q9BQI6 1058 aa13.07□□□□□ -0.32
PCF11-201ENST00000298281 SGK1O00141 431 aa13.06□□□□□ -0.32
PCF11-201ENST00000298281 CAPZA2P47755 286 aa13.06□□□□□ -0.32
PCF11-201ENST00000298281 KIF19Q2TAC6 998 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms