RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RASSF7Q02833 373 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 MTMR3Q13615 1198 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 ALX1Q15699 326 aa16.92■□□□□ 0.3
SHH-201ENST00000297261 CACNA1FO60840 1977 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 RPN1P04843 607 aaKnown RBP16.91■□□□□ 0.3
SHH-201ENST00000297261 CYP2D6P10635 497 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 CASP1P29466 404 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 PTF1AQ7RTS3 328 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 CETN3O15182 167 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 GTPBP6O43824 516 aaPredicted RBP16.91■□□□□ 0.3
SHH-201ENST00000297261 GGCXP38435 758 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 VSNL1P62760 191 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 HERC4Q5GLZ8 1057 aaPredicted RBP16.91■□□□□ 0.3
SHH-201ENST00000297261 TMC4Q7Z404 712 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 CABP7Q86V35 215 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 CUL5Q93034 780 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 MRFAP1Q9Y605 127 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 FAM208AQ9UK61 1670 aaKnown RBP16.91■□□□□ 0.3
SHH-201ENST00000297261 SPOPO43791 374 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 POLD1P28340 1107 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 NYAP1Q6ZVC0 841 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 JDP2Q8WYK2 163 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 BRIP1Q9BX63 1249 aa16.91■□□□□ 0.3
SHH-201ENST00000297261 MRC1P22897 1456 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 KRIT1O00522 736 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 MFAP3LO75121 409 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 EEF2P13639 858 aaKnown RBP16.9■□□□□ 0.3
SHH-201ENST00000297261 VWA3BQ502W6 1294 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 HS2ST1Q7LGA3 356 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 CCDC65Q8IXS2 484 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 KCNB2Q92953 911 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 ARHGEF2Q92974 986 aaKnown RBP16.9■□□□□ 0.3
SHH-201ENST00000297261 CD209Q9NNX6 404 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 LRWD1Q9UFC0 647 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 GOLGA8HP0CJ92 632 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 NAA35Q5VZE5 725 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 STMN2Q93045 179 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 EPSTI1Q96J88 318 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 NAP1L3Q99457 506 aaPredicted RBP16.9■□□□□ 0.3
SHH-201ENST00000297261 FMNL1O95466 1100 aaPredicted RBP16.9■□□□□ 0.3
SHH-201ENST00000297261 GPSM2P81274 684 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 DENND2CQ68D51 928 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 SMC6Q96SB8 1091 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 ADGRG1Q9Y653 693 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 TEX33O43247 280 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 IFNAR1P17181 557 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 PLA2G4AP47712 749 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 CCDC38Q502W7 563 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 HIBCHQ6NVY1 386 aaPredicted RBP16.9■□□□□ 0.3
SHH-201ENST00000297261 CCDC63Q8NA47 563 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 FAM184BQ9ULE4 1060 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 PCDHB6Q9Y5E3 794 aa16.9■□□□□ 0.3
SHH-201ENST00000297261 DDAH1O94760 285 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 PLS1Q14651 629 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 SEL1L2Q5TEA6 688 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 C3orf67Q6ZVT6 689 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 CNKSR1Q969H4 720 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 CEP63Q96MT8 703 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 NPR1P16066 1061 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 FGFR2P21802 821 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 SH3RF3Q8TEJ3 882 aaPredicted RBP16.89■□□□□ 0.29
SHH-201ENST00000297261 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.89■□□□□ 0.29
SHH-201ENST00000297261 PNPLA7Q6ZV29 1317 aa16.89■□□□□ 0.29
SHH-201ENST00000297261 HIP1RO75146 1068 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 TNFAIP3P21580 790 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 CCDC174Q6PII3 467 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 SNX29Q8TEQ0 813 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 LY9Q9HBG7 655 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 DCP1AQ9NPI6 582 aaPredicted RBP16.88■□□□□ 0.29
SHH-201ENST00000297261 ASIC3Q9UHC3 531 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 KLRK1P26718 216 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 ZNF131P52739 623 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 TSNAXIP1Q2TAA8 658 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 TAOK1Q7L7X3 1001 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 SLC39A2Q9NP94 309 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 ATP2A1O14983 1001 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 FLOT1O75955 427 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 NR1D1P20393 614 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 GPKOWQ92917 476 aaPredicted RBP eCLIP16.88■□□□□ 0.29
SHH-201ENST00000297261 SUGCTQ9HAC7 445 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 FNBP4Q8N3X1 1017 aaPredicted RBP16.88■□□□□ 0.29
SHH-201ENST00000297261 EPB41L4AQ9HCS5 686 aaPredicted RBP16.88■□□□□ 0.29
SHH-201ENST00000297261 HDAC6Q9UBN7 1215 aa16.88■□□□□ 0.29
SHH-201ENST00000297261 ACTN3Q08043 901 aaPredicted RBP16.87■□□□□ 0.29
SHH-201ENST00000297261 TNIP1Q15025 636 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 KRT31Q15323 416 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 CCDC105Q8IYK2 499 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 SUPT20HQ8NEM7 779 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 NSUN4Q96CB9 384 aaKnown RBP16.87■□□□□ 0.29
SHH-201ENST00000297261 RNF26Q9BY78 433 aaPredicted RBP16.87■□□□□ 0.29
SHH-201ENST00000297261 SCG2P13521 617 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 ABCB4P21439 1286 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 CDC27P30260 824 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 GBP1P32455 592 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 APBA1Q02410 837 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 RIN2Q8WYP3 895 aaPredicted RBP16.87■□□□□ 0.29
SHH-201ENST00000297261 FOXN1O15353 648 aa16.87■□□□□ 0.29
SHH-201ENST00000297261 RPL13P26373 211 aaKnown RBP16.87■□□□□ 0.29
SHH-201ENST00000297261 LRRC47Q8N1G4 583 aaKnown RBP16.87■□□□□ 0.29
SHH-201ENST00000297261 CNOT6LQ96LI5 555 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 138.9 ms