RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 RIN2Q8WYP3 895 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 NFU1Q9UMS0 254 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PCDHA4Q9UN74 947 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PTPRUQ92729 1446 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 MECOMQ03112 1051 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 NCAPHQ15003 741 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 E2F5Q15329 346 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 RUFY4Q6ZNE9 571 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 TFRCP02786 760 aaKnown RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 CRKLP46109 303 aaKnown RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 TOB1P50616 345 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 NFRKBQ6P4R8 1299 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 STAG2Q8N3U4 1231 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 KANSL2Q9H9L4 492 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 EPB41L4AQ9HCS5 686 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 BTDP43251 543 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 SCNN1DP51172 638 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 DOK7Q18PE1 504 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 DENND2CQ68D51 928 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 KIF11P52732 1056 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 CALCOCO2Q13137 446 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 UBE2SQ16763 222 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PFKFB3Q16875 520 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 POTEDQ86YR6 584 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 TMEM47Q9BQJ4 181 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 VEZTQ9HBM0 779 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PRDM4Q9UKN5 801 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 MEIS1O00470 390 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PALMO75781 387 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PPP1R14CQ8TAE6 165 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 SAMD15Q9P1V8 674 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 FAM169AQ9Y6X4 670 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 ERVV-1B6SEH8 477 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 TRAPPC10P48553 1259 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 CACNA2D3Q8IZS8 1091 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 FNBP4Q8N3X1 1017 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 ANKS4BQ8N8V4 417 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 MS4A14Q96JA4 679 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PNKPQ96T60 521 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 TUBE1Q9UJT0 475 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 SPATA31A3Q5VYP0 1347 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 EXOC3O60645 756 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PLA2G4BP0C869 781 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 SLC16A2P36021 539 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 FOXP4Q8IVH2 680 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 UAP1Q16222 522 aaPredicted RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 INTS8Q75QN2 995 aaKnown RBP5.07□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC170Q8IYT3 715 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 SH2D3CQ8N5H7 860 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 MINPP1Q9UNW1 487 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 RASGRP2Q7LDG7 609 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 ANKRD42Q8N9B4 389 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PLVAPQ9BX97 442 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 NDST4Q9H3R1 872 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 CUEDC2Q9H467 287 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 PCDHA1Q9Y5I3 950 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 N4BP1O75113 896 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 RBM26Q5T8P6 1007 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 PIGSQ96S52 555 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 TACO1Q9BSH4 297 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 CFBP00751 764 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 CTNNA1P35221 906 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ARHGAP25P42331 645 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ANKRD40Q6AI12 368 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 TCHPQ9BT92 498 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 NUCKS1Q9H1E3 243 aaKnown RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 BAIAP2L1Q9UHR4 511 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 DIP2BQ9P265 1576 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 RGS16O15492 202 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 GAS7O60861 476 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 FCER1AP12319 257 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 MESDQ14696 234 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 WDR78Q5VTH9 848 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 KCTD1Q719H9 257 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 L2HGDHQ9H9P8 463 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 MYO1CO00159 1063 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ATP2C1P98194 919 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 PHLDB2Q86SQ0 1253 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 EFCAB13Q8IY85 973 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 NAP1L3Q99457 506 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ATP6V0A2Q9Y487 856 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 FHOD1Q9Y613 1164 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 H2AFXP16104 143 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 DPH6Q7L8W6 267 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ZNF446Q9NWS9 450 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 NNTQ13423 1086 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 FAM182BQ5T319 152 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 UBL4BQ8N7F7 174 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 KIFC2Q96AC6 838 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 SYNCQ9H7C4 482 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 PACSIN2Q9UNF0 486 aaPredicted RBP5.06□□□□□ -1.6
VPS13C-201ENST00000249837 BACH1O14867 736 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 SERPING1P05155 500 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 BIRC3Q13489 604 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 SEL1L2Q5TEA6 688 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 GJA10Q969M2 543 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 HDAC9Q9UKV0 1011 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ATP8A1Q9Y2Q0 1164 aa5.06□□□□□ -1.6
VPS13C-201ENST00000249837 ESYT3A0FGR9 886 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms