RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Csgalnact2Q8C1F4 542 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pspc1Q8R326 523 aaKnown RBP12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pex11aQ9Z211 246 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Sdf4Q61112 361 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Vmn1r199Q8R280 367 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ola1Q9CZ30 396 aaKnown RBP12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Eif4g3Q80XI3 1579 aaKnown RBP12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 EsrraO08580 422 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pja1O55176 578 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Tfdp1Q08639 410 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Wdr27Q8C5V5 780 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Prpsap2Q8R574 369 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 HdlbpQ8VDJ3 1268 aaKnown RBP12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pls3Q99K51 630 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Sesn2P58043 480 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Fam81aQ3UXZ6 364 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ckap2Q3V1H1 664 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ckap2lQ7TS74 745 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm6370A0A0G2JGX9 315 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Mmrn1B2RPV6 1210 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm6309L7N481 315 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 NostrinQ6WKZ7 506 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Tmem132dQ76HP3 1097 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Erp44Q9D1Q6 406 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Orc3Q9JK30 715 aaKnown RBP12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Itsn2Q9Z0R6 1659 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm3248K7N721 186 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Kctd16Q5DTY9 427 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Adora1Q60612 326 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ifit1Q64282 463 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Sgsm2Q80U12 1005 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Casp14O89094 257 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 LdhbP16125 334 aaKnown RBP12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Kcnk13Q8R1P5 405 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 ArhgdiaQ99PT1 204 aaKnown RBP12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Med7Q9CZB6 233 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Dhx38Q80X98 1228 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Atp1a1Q8VDN2 1023 aaKnown RBP12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Cuedc2Q9CXX9 284 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Nr2f2P43135 414 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gbp10Q000W5 611 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Tas2r124Q7M718 309 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Dpp8Q80YA7 892 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Adi1Q99JT9 179 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Dennd4bQ3U1Y4 1499 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Abcc2Q8VI47 1543 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ano3A2AHL1 981 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Tm6sf1P58749 370 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Irx1P81068 480 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Thumpd3P97770 505 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Zswim7Q9CWQ2 152 aa12.91□□□□□ -0.34
Trim56-201ENSMUST00000054384 Krt24A1L317 512 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Nlrp1bA1Z198 1177 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Grin1P35438 938 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Samsn1P57725 372 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Znf518aB2RRF6 1478 aaKnown RBP12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Aifm3Q3TY86 605 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Krt87Q6IMF0 495 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 4931423N10RikQ9D4J9 382 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm2237E9Q501 211 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm3591K7N6X2 186 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ctnnd1P30999 938 aaKnown RBP12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ulk4Q3V129 1303 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Cep85lA0A1W2P884 806 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 YwhahP68510 246 aaKnown RBP12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Aldh18a1Q9Z110 795 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Prkg1P0C605 671 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 CrklP47941 303 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 QarsQ8BML9 775 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Glt1d1A4FUP9 346 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Scaf1Q5U4C3 1256 aaKnown RBP12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Slc12a6Q924N4 1150 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 PzpQ61838 1495 aa12.9□□□□□ -0.34
Trim56-201ENSMUST00000054384 Rsbn1lD3Z0K6 821 aa12.9□□□□□ -0.35
Trim56-201ENSMUST00000054384 Nlrp1aQ2LKU9 1182 aa12.9□□□□□ -0.35
Trim56-201ENSMUST00000054384 Acad11Q80XL6 779 aa12.9□□□□□ -0.35
Trim56-201ENSMUST00000054384 Glrx3Q9CQM9 337 aa12.9□□□□□ -0.35
Trim56-201ENSMUST00000054384 PalmdQ9JHU2 551 aa12.9□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cul1Q9WTX6 776 aa12.9□□□□□ -0.35
Trim56-201ENSMUST00000054384 Elmsan1E9Q2I4 1089 aaKnown RBP12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Anxa1P10107 346 aaKnown RBP12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Trim38Q5SZ99 471 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 CcnyQ8BGU5 341 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ccdc159Q8C963 411 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Raph1F2Z3U3 1266 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Stox1B2RQL2 990 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Per2O54943 1257 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pdcd2P46718 343 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mettl17Q3U2U7 461 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Fbxo11Q7TPD1 930 aaKnown RBP12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Me3Q8BMF3 604 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Abcb6Q9DC29 842 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tnfrsf10bQ9QZM4 381 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Spata31d1bE9QA57 1361 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Zyg11aA2BFL2 627 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 EspnlQ3UYR4 1005 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm5580A0A0N4SVP8 411 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm3402K7N5P2 326 aa12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ccdc84Q4VA36 332 aaKnown RBP12.89□□□□□ -0.35
Trim56-201ENSMUST00000054384 NntQ61941 1086 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 22,080 RNA–protein pairs in 53.2 ms