RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 ZNF804AQ7Z570 1209 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 NGLY1Q96IV0 654 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 CAPZA3Q96KX2 299 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 SPZ1Q9BXG8 430 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 SEMA6BQ9H3T3 888 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 FEZ2Q9UHY8 353 aaPredicted RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 DDX60LQ5H9U9 1706 aaKnown RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 EP400Q96L91 3159 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 MYCNP04198 464 aaPredicted RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 HNRNPH2P55795 449 aaKnown RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 GALNT17Q6IS24 598 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 NEK8Q86SG6 692 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 PCMTD1Q96MG8 357 aaPredicted RBP16.65■□□□□ 0.26
CLN3-253ENST00000636977 MMS19Q96T76 1030 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 RSPH14Q9UHP6 348 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 MYH1P12882 1939 aa16.65■□□□□ 0.26
CLN3-253ENST00000636977 EPHB6O15197 1021 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 CHRM1P11229 460 aaPredicted RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 CCNE1P24864 410 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 BRD2P25440 801 aaKnown RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 DNM2P50570 870 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 WHAMMP3Q1A5X7 153 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 DYMQ7RTS9 669 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 CNBD1Q8NA66 436 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 GLIS3Q8NEA6 775 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 DHTKD1Q96HY7 919 aaPredicted RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 NUDT12Q9BQG2 462 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 L1RE1Q9UN81 338 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 LOC102724159A0A0B4J2E5 919 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 SLC37A4O43826 429 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 SLURP2P0DP57 97 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 MTIF2P46199 727 aaKnown RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 RHBDL3P58872 404 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 PWP2Q15269 919 aaKnown RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 TRAPPC11Q7Z392 1133 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 KRT26Q7Z3Y9 468 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 KRT25Q7Z3Z0 450 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 NEDD1Q8NHV4 660 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 RRP36Q96EU6 259 aaKnown RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 HINFPQ9BQA5 517 aa16.64■□□□□ 0.25
CLN3-253ENST00000636977 NHEJ1Q9H9Q4 299 aaPredicted RBP16.64■□□□□ 0.25
CLN3-253ENST00000636977 TULP2O00295 520 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 LAD1O00515 517 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 ZNF185O15231 689 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 TDP2O95551 362 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 GRB10Q13322 594 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 FAM196AQ6ZSG2 479 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 LRRC47Q8N1G4 583 aaKnown RBP16.63■□□□□ 0.25
CLN3-253ENST00000636977 SMCR8Q8TEV9 937 aaPredicted RBP16.63■□□□□ 0.25
CLN3-253ENST00000636977 NOC4LQ9BVI4 516 aaKnown RBP16.63■□□□□ 0.25
CLN3-253ENST00000636977 C6orf50Q9HD87 102 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 CDK5RAP2Q96SN8 1893 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 POTEMA6NI47 508 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 MYMKA6NI61 221 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 ZNF263O14978 683 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 HNRNPLLQ8WVV9 542 aaKnown RBP16.63■□□□□ 0.25
CLN3-253ENST00000636977 C7orf25Q9BPX7 421 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 BLOC1S4Q9NUP1 217 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 MYO1AQ9UBC5 1043 aa16.63■□□□□ 0.25
CLN3-253ENST00000636977 ZNF831Q5JPB2 1677 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 GPR75-ASB3A0A0A6YYF3 556 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 ZMYND10O75800 440 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 MEA1Q16626 185 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 MFSD14BQ5SR56 506 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 KIAA1328Q86T90 577 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 BTAF1O14981 1849 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 MACROD2A1Z1Q3 448 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 PSMD14O00487 310 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 LDHCP07864 332 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 ATP2B2Q01814 1243 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 PICALMQ13492 652 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 TSR1Q2NL82 804 aaKnown RBP16.62■□□□□ 0.25
CLN3-253ENST00000636977 SOGA3Q5TF21 947 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 PRR5LQ6MZQ0 368 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 TMED8Q6PL24 325 aaPredicted RBP16.62■□□□□ 0.25
CLN3-253ENST00000636977 KCNK18Q7Z418 384 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 JAKMIP2Q96AA8 810 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 PNMA5Q96PV4 448 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 HAUS4Q9H6D7 363 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 SEC63Q9UGP8 760 aaKnown RBP16.62■□□□□ 0.25
CLN3-253ENST00000636977 RGL2O15211 777 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 MYL1P05976 194 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 RAD51AP2Q09MP3 1159 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 TRAPPC3LQ5T215 181 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 REXO1Q8N1G1 1221 aaKnown RBP16.62■□□□□ 0.25
CLN3-253ENST00000636977 AK8Q96MA6 479 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 ADAM21Q9UKJ8 722 aa16.62■□□□□ 0.25
CLN3-253ENST00000636977 TUBB2AQ13885 445 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 LZTS2Q9BRK4 669 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 TUBB2BQ9BVA1 445 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 GPCPD1Q9NPB8 672 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 POLLQ9UGP5 575 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 LRRIQ3A6PVS8 624 aaPredicted RBP16.61■□□□□ 0.25
CLN3-253ENST00000636977 PDHBP11177 359 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 GNA11P29992 359 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 LRRC41Q15345 812 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 HDXQ7Z353 690 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 GDAP1L1Q96MZ0 367 aa16.61■□□□□ 0.25
CLN3-253ENST00000636977 FAM207AQ9NSI2 230 aaPredicted RBP16.61■□□□□ 0.25
CLN3-253ENST00000636977 VPS18Q9P253 973 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms