RNA–Protein interactions for RNA: ENST00000621747.5

VEGFA-229, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-229ENST00000621747 SOX1O00570 391 aaPredicted RBP29.39■■■□□ 2.3
VEGFA-229ENST00000621747 SMPD1P17405 629 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 MRPL12P52815 198 aaKnown RBP29.39■■■□□ 2.3
VEGFA-229ENST00000621747 QRICH1Q2TAL8 776 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 ANKRD33Q7Z3H0 272 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 VTI1AQ96AJ9 217 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 TOX2Q96NM4 488 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 JMJD4Q9H9V9 463 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 VAT1LQ9HCJ6 419 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 Q9Y3F1 56 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 MROH7Q68CQ1 1323 aa29.39■■■□□ 2.3
VEGFA-229ENST00000621747 DCDC2CA8MYV0 355 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 PDE4DQ08499 809 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 WTAPQ15007 396 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 SH3RF1Q7Z6J0 888 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 FBXO11Q86XK2 927 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 STAG2Q8N3U4 1231 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 MRPL11Q9Y3B7 192 aaKnown RBP29.38■■■□□ 2.29
VEGFA-229ENST00000621747 TAF6LQ9Y6J9 622 aa29.38■■■□□ 2.29
VEGFA-229ENST00000621747 TRIM43BA6NCK2 446 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 KLRF2D3W0D1 207 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 CTAGE5O15320 804 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 DYNC1LI2O43237 492 aaPredicted RBP29.37■■■□□ 2.29
VEGFA-229ENST00000621747 ZEB2O60315 1214 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 BEX3Q00994 111 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 FSCN1Q16658 493 aaKnown RBP29.37■■■□□ 2.29
VEGFA-229ENST00000621747 STOX1Q6ZVD7 989 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 MCF2L2Q86YR7 1114 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 TRIM43Q96BQ3 446 aaPredicted RBP29.37■■■□□ 2.29
VEGFA-229ENST00000621747 MAD2L2Q9UI95 211 aa29.37■■■□□ 2.29
VEGFA-229ENST00000621747 LTBP2Q14767 1821 aa29.36■■■□□ 2.29
VEGFA-229ENST00000621747 A0A0U1RQG5 324 aaPredicted RBP29.36■■■□□ 2.29
VEGFA-229ENST00000621747 BADQ92934 168 aa29.36■■■□□ 2.29
VEGFA-229ENST00000621747 LRCH3Q96II8 777 aa29.36■■■□□ 2.29
VEGFA-229ENST00000621747 ESYT1Q9BSJ8 1104 aa29.36■■■□□ 2.29
VEGFA-229ENST00000621747 PALM3A6NDB9 673 aaPredicted RBP29.35■■■□□ 2.29
VEGFA-229ENST00000621747 DUSP28Q4G0W2 176 aa29.35■■■□□ 2.29
VEGFA-229ENST00000621747 BMP2KLQ5H9B9 411 aa29.35■■■□□ 2.29
VEGFA-229ENST00000621747 TMEM67Q5HYA8 995 aa29.35■■■□□ 2.29
VEGFA-229ENST00000621747 AMNQ9BXJ7 453 aa29.35■■■□□ 2.29
VEGFA-229ENST00000621747 WDR11Q9BZH6 1224 aa29.35■■■□□ 2.29
VEGFA-229ENST00000621747 LSG1Q9H089 658 aaKnown RBP29.35■■■□□ 2.29
VEGFA-229ENST00000621747 TMEM39AQ9NV64 488 aa29.35■■■□□ 2.29
VEGFA-229ENST00000621747 KIAA0355O15063 1070 aa29.34■■■□□ 2.29
VEGFA-229ENST00000621747 CABYRO75952 493 aa29.34■■■□□ 2.29
VEGFA-229ENST00000621747 EDNRBP24530 442 aa29.34■■■□□ 2.29
VEGFA-229ENST00000621747 GRM4Q14833 912 aa29.34■■■□□ 2.29
VEGFA-229ENST00000621747 CHST3Q7LGC8 479 aa29.34■■■□□ 2.29
VEGFA-229ENST00000621747 RBM47A0AV96 593 aaKnown RBP29.33■■■□□ 2.29
VEGFA-229ENST00000621747 ARVCFO00192 962 aa29.33■■■□□ 2.29
VEGFA-229ENST00000621747 RAG1P15918 1043 aa29.33■■■□□ 2.29
VEGFA-229ENST00000621747 FAAP100Q0VG06 881 aa29.33■■■□□ 2.29
VEGFA-229ENST00000621747 CATIPQ7Z7H3 387 aa29.33■■■□□ 2.29
VEGFA-229ENST00000621747 MB21D2Q8IYB1 491 aaPredicted RBP29.33■■■□□ 2.29
VEGFA-229ENST00000621747 CDK7P50613 346 aa29.32■■■□□ 2.28
VEGFA-229ENST00000621747 GPR153Q6NV75 609 aa29.32■■■□□ 2.28
VEGFA-229ENST00000621747 MTMR8Q96EF0 704 aa29.32■■■□□ 2.28
VEGFA-229ENST00000621747 ZBTB5O15062 677 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 PTGS1P23219 599 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 ANTXR2P58335 489 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 TRAF1Q13077 416 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 TMEM63BQ5T3F8 832 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 CASC1Q6TDU7 716 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 CXCL17Q6UXB2 119 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 SYTL5Q8TDW5 730 aaPredicted RBP29.31■■■□□ 2.28
VEGFA-229ENST00000621747 SCFD2Q8WU76 684 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 TBC1D5Q92609 795 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 MTA3Q9BTC8 594 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 SENP2Q9HC62 589 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 ANO2Q9NQ90 1003 aa29.31■■■□□ 2.28
VEGFA-229ENST00000621747 NKRFO15226 690 aaKnown RBP eCLIP29.3■■■□□ 2.284e-7■□□□□ 10.1
VEGFA-229ENST00000621747 TLR3O15455 904 aaKnown RBP29.3■■■□□ 2.28
VEGFA-229ENST00000621747 TROAPQ12815 778 aa29.3■■■□□ 2.28
VEGFA-229ENST00000621747 PPP2R5BQ15173 497 aa29.3■■■□□ 2.28
VEGFA-229ENST00000621747 IGDCC4Q8TDY8 1250 aa29.3■■■□□ 2.28
VEGFA-229ENST00000621747 NSUN6Q8TEA1 469 aaKnown RBP29.3■■■□□ 2.28
VEGFA-229ENST00000621747 SZT2Q5T011 3432 aa29.3■■■□□ 2.28
VEGFA-229ENST00000621747 ITGB8P26012 769 aa29.29■■■□□ 2.28
VEGFA-229ENST00000621747 SKAP1Q86WV1 359 aa29.29■■■□□ 2.28
VEGFA-229ENST00000621747 OR6J1Q8NGC5 347 aa29.29■■■□□ 2.28
VEGFA-229ENST00000621747 TAAR1Q96RJ0 339 aa29.29■■■□□ 2.28
VEGFA-229ENST00000621747 SEZ6LQ9BYH1 1024 aa29.29■■■□□ 2.28
VEGFA-229ENST00000621747 RIOX1Q9H6W3 641 aa29.29■■■□□ 2.28
VEGFA-229ENST00000621747 LAMA3Q16787 3333 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 SLC27A2O14975 620 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 CPT1AP50416 773 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 HOMER1Q86YM7 354 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 IWS1Q96ST2 819 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 RMDN3Q96TC7 470 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 TBX21Q9UL17 535 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 PCDHA1Q9Y5I3 950 aa29.28■■■□□ 2.28
VEGFA-229ENST00000621747 PRC1O43663 620 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 CFBP00751 764 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 MCM5P33992 734 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 TTLL4Q14679 1199 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 BRDTQ58F21 947 aaPredicted RBP29.27■■■□□ 2.28
VEGFA-229ENST00000621747 CREB3L3Q68CJ9 461 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 FAM126BQ8IXS8 530 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 SLC43A3Q8NBI5 491 aa29.27■■■□□ 2.28
VEGFA-229ENST00000621747 MAP3K14Q99558 947 aa29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms