RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 MFAP1P55081 439 aaKnown RBP22.28■■□□□ 1.16
CDX1-202ENST00000616154 HAND2P61296 217 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 BAATQ14032 418 aaPredicted RBP22.28■■□□□ 1.16
CDX1-202ENST00000616154 AKNAD1Q5T1N1 836 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 RASIP1Q5U651 963 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 PSRC1Q6PGN9 363 aaPredicted RBP22.28■■□□□ 1.16
CDX1-202ENST00000616154 TTC14Q96N46 770 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 GPCPD1Q9NPB8 672 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 PNMA2Q9UL42 364 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 PRUNE2Q8WUY3 3088 aa22.27■■□□□ 1.16
CDX1-202ENST00000616154 NFIBO00712 420 aa22.27■■□□□ 1.16
CDX1-202ENST00000616154 FOSL2P15408 326 aa22.27■■□□□ 1.16
CDX1-202ENST00000616154 ALDH5A1P51649 535 aaPredicted RBP22.27■■□□□ 1.16
CDX1-202ENST00000616154 ITGA7Q13683 1181 aa22.27■■□□□ 1.16
CDX1-202ENST00000616154 MFSD6Q6ZSS7 791 aa22.27■■□□□ 1.16
CDX1-202ENST00000616154 COL25A1Q9BXS0 654 aaPredicted RBP22.27■■□□□ 1.16
CDX1-202ENST00000616154 GRIN2DO15399 1336 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 SNHG28P0DPA3 235 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 GSPT1P15170 499 aaKnown RBP22.26■■□□□ 1.15
CDX1-202ENST00000616154 ZNF543Q08ER8 600 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 DUSP28Q4G0W2 176 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 TMEM63BQ5T3F8 832 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 TTC22Q5TAA0 569 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 KIAA1211Q6ZU35 1233 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 TBC1D10CQ8IV04 446 aa22.26■■□□□ 1.15
CDX1-202ENST00000616154 CYP2C18P33260 490 aa22.25■■□□□ 1.15
CDX1-202ENST00000616154 CLEC4DQ8WXI8 215 aa22.25■■□□□ 1.15
CDX1-202ENST00000616154 RNF41Q9H4P4 317 aaPredicted RBP22.25■■□□□ 1.15
CDX1-202ENST00000616154 IL23AQ9NPF7 189 aa22.25■■□□□ 1.15
CDX1-202ENST00000616154 DIAPH3Q9NSV4 1193 aa22.25■■□□□ 1.15
CDX1-202ENST00000616154 WDR19Q8NEZ3 1342 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 VCANP13611 3396 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 RBM47A0AV96 593 aaKnown RBP22.24■■□□□ 1.15
CDX1-202ENST00000616154 PTPDC1A2A3K4 754 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 ACRP10323 421 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 NT5C2P49902 561 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 GRIN2CQ14957 1233 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 SLC30A10Q6XR72 485 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 ZNF365Q70YC5 407 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 TIFAQ96CG3 184 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 HIPK3Q9H422 1215 aa22.24■■□□□ 1.15
CDX1-202ENST00000616154 MYO9BQ13459 2157 aa22.23■■□□□ 1.15
CDX1-202ENST00000616154 CWC27Q6UX04 472 aaKnown RBP22.23■■□□□ 1.15
CDX1-202ENST00000616154 RNF207Q6ZRF8 634 aa22.23■■□□□ 1.15
CDX1-202ENST00000616154 ESR2Q92731 530 aa22.23■■□□□ 1.15
CDX1-202ENST00000616154 WDR11Q9BZH6 1224 aa22.23■■□□□ 1.15
CDX1-202ENST00000616154 ZNF576Q9H609 170 aa22.23■■□□□ 1.15
CDX1-202ENST00000616154 GBF1Q92538 1859 aa22.23■■□□□ 1.15
CDX1-202ENST00000616154 NEDD4P46934 1319 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 B4GALT4O60513 344 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 CALML3P27482 149 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 PSMC6P62333 389 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 HERVK_113Q902F9 699 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 DSCC1Q9BVC3 393 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 NOC4LQ9BVI4 516 aaKnown RBP22.22■■□□□ 1.15
CDX1-202ENST00000616154 PBX4Q9BYU1 374 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 TRPV6Q9H1D0 765 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 POLR3EQ9NVU0 708 aa22.22■■□□□ 1.15
CDX1-202ENST00000616154 SCN10AQ9Y5Y9 1956 aa22.21■■□□□ 1.15
CDX1-202ENST00000616154 UMODL1Q5DID0 1318 aa22.21■■□□□ 1.15
CDX1-202ENST00000616154 RPS6P62753 249 aaKnown RBP22.21■■□□□ 1.15
CDX1-202ENST00000616154 GPATCH4Q5T3I0 446 aaKnown RBP22.21■■□□□ 1.15
CDX1-202ENST00000616154 DGKHQ86XP1 1220 aa22.21■■□□□ 1.15
CDX1-202ENST00000616154 MYH6P13533 1939 aa22.21■■□□□ 1.15
CDX1-202ENST00000616154 RAD50Q92878 1312 aa22.2■■□□□ 1.15
CDX1-202ENST00000616154 GRXCR1A8MXD5 290 aa22.2■■□□□ 1.14
CDX1-202ENST00000616154 ZNF213O14771 459 aa22.2■■□□□ 1.14
CDX1-202ENST00000616154 EDNRBP24530 442 aa22.2■■□□□ 1.14
CDX1-202ENST00000616154 CPT1AP50416 773 aa22.2■■□□□ 1.14
CDX1-202ENST00000616154 DNERQ8NFT8 737 aa22.2■■□□□ 1.14
CDX1-202ENST00000616154 CCDC136Q96JN2 1154 aa22.2■■□□□ 1.14
CDX1-202ENST00000616154 MPHOSPH6Q99547 160 aaKnown RBP22.2■■□□□ 1.14
CDX1-202ENST00000616154 ALDH8A1Q9H2A2 487 aaPredicted RBP22.2■■□□□ 1.14
CDX1-202ENST00000616154 MTIF3Q9H2K0 278 aaKnown RBP22.2■■□□□ 1.14
CDX1-202ENST00000616154 SPTBN5Q9NRC6 3674 aaKnown RBP22.19■■□□□ 1.14
CDX1-202ENST00000616154 CHD9Q3L8U1 2897 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 PBX2P40425 430 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 PURAQ00577 322 aaKnown RBP22.19■■□□□ 1.14
CDX1-202ENST00000616154 PDE4DQ08499 809 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 CCDC178Q5BJE1 867 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 OR6J1Q8NGC5 347 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 ZKSCAN3Q9BRR0 538 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 WNT8AQ9H1J5 351 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 IL25Q9H293 177 aa22.19■■□□□ 1.14
CDX1-202ENST00000616154 NKRFO15226 690 aaKnown RBP eCLIP22.18■■□□□ 1.14
CDX1-202ENST00000616154 FGBP02675 491 aa22.18■■□□□ 1.14
CDX1-202ENST00000616154 CCL23P55773 120 aa22.18■■□□□ 1.14
CDX1-202ENST00000616154 RGS22Q8NE09 1264 aa22.18■■□□□ 1.14
CDX1-202ENST00000616154 CXXC1Q9P0U4 656 aaPredicted RBP22.18■■□□□ 1.14
CDX1-202ENST00000616154 B4DLN1 442 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 GOLGA8HP0CJ92 632 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 MRPL12P52815 198 aaKnown RBP22.17■■□□□ 1.14
CDX1-202ENST00000616154 PPP2R5BQ15173 497 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 RAB30Q15771 203 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 IQCA1Q86XH1 822 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 PNMA1Q8ND90 353 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 SCFD2Q8WU76 684 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 ANKS1AQ92625 1134 aa22.17■■□□□ 1.14
CDX1-202ENST00000616154 MTG1Q9BT17 334 aaPredicted RBP22.17■■□□□ 1.14
CDX1-202ENST00000616154 MAF1Q9H063 256 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms