RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CLEC4DQ8WXI8 215 aa15.04■□□□□ -0
CLK3-224ENST00000568605 BRF1Q92994 677 aa15.04■□□□□ -0
CLK3-224ENST00000568605 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.04■□□□□ -0
CLK3-224ENST00000568605 ZHX1Q9UKY1 873 aaPredicted RBP15.04■□□□□ -0
CLK3-224ENST00000568605 PCDHA1Q9Y5I3 950 aa15.04■□□□□ -0
CLK3-224ENST00000568605 CYTH3O43739 400 aa15.03■□□□□ -0
CLK3-224ENST00000568605 CPA1P15085 419 aa15.03■□□□□ -0
CLK3-224ENST00000568605 METAP2P50579 478 aaKnown RBP eCLIP15.03■□□□□ -0
CLK3-224ENST00000568605 ALDH5A1P51649 535 aaPredicted RBP15.03■□□□□ -0
CLK3-224ENST00000568605 CNTN2Q02246 1040 aa15.03■□□□□ -0
CLK3-224ENST00000568605 RAB11FIP4Q86YS3 637 aa15.03■□□□□ -0
CLK3-224ENST00000568605 ZSWIM6Q9HCJ5 1215 aa15.03■□□□□ -0
CLK3-224ENST00000568605 MAP3K20Q9NYL2 800 aaKnown RBP15.03■□□□□ -0
CLK3-224ENST00000568605 OGDHLQ9ULD0 1010 aa15.03■□□□□ -0
CLK3-224ENST00000568605 CNTNAP5Q8WYK1 1306 aa15.02■□□□□ -0
CLK3-224ENST00000568605 SOWAHBA6NEL2 793 aa15.02■□□□□ -0
CLK3-224ENST00000568605 PLEKHA8P1O95397 391 aa15.02■□□□□ -0
CLK3-224ENST00000568605 RARBP10826 455 aa15.02■□□□□ -0
CLK3-224ENST00000568605 APOBRQ0VD83 1088 aa15.02■□□□□ -0
CLK3-224ENST00000568605 TRPV1Q8NER1 839 aa15.02■□□□□ -0
CLK3-224ENST00000568605 FGD4Q96M96 766 aa15.02■□□□□ -0
CLK3-224ENST00000568605 HTATIP2Q9BUP3 242 aa15.02■□□□□ -0
CLK3-224ENST00000568605 AGXT2Q9BYV1 514 aa15.02■□□□□ -0
CLK3-224ENST00000568605 TNRC18O15417 2968 aaPredicted RBP15.01□□□□□ -0.01
CLK3-224ENST00000568605 hCG_1984214I3L0E3 225 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 CFBP00751 764 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 ZNF865P0CJ78 1059 aaPredicted RBP15.01□□□□□ -0.01
CLK3-224ENST00000568605 PDE4DQ08499 809 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 ACVR2BQ13705 512 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 NECAB2Q7Z6G3 386 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 ZNF713Q8N859 430 aaPredicted RBP15.01□□□□□ -0.01
CLK3-224ENST00000568605 ARRDC4Q8NCT1 418 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 PIBF1Q8WXW3 757 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 UPF3BQ9BZI7 483 aaKnown RBP15.01□□□□□ -0.01
CLK3-224ENST00000568605 VTA1Q9NP79 307 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 RBM27Q9P2N5 1060 aaKnown RBP15.01□□□□□ -0.01
CLK3-224ENST00000568605 BRPF3Q9ULD4 1205 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 FAM184BQ9ULE4 1060 aa15.01□□□□□ -0.01
CLK3-224ENST00000568605 KBTBD13C9JR72 458 aa15□□□□□ -0.01
CLK3-224ENST00000568605 PPP1R11O60927 126 aaPredicted RBP15□□□□□ -0.01
CLK3-224ENST00000568605 SNAI1O95863 264 aaPredicted RBP15□□□□□ -0.01
CLK3-224ENST00000568605 GHRHRQ02643 423 aa15□□□□□ -0.01
CLK3-224ENST00000568605 SLC35G1Q2M3R5 365 aa15□□□□□ -0.01
CLK3-224ENST00000568605 PRAMEF19Q5SWL8 479 aa15□□□□□ -0.01
CLK3-224ENST00000568605 LHX8Q68G74 356 aa15□□□□□ -0.01
CLK3-224ENST00000568605 SRBD1Q8N5C6 995 aaKnown RBP15□□□□□ -0.01
CLK3-224ENST00000568605 NSUN6Q8TEA1 469 aaKnown RBP15□□□□□ -0.01
CLK3-224ENST00000568605 CUL5Q93034 780 aa15□□□□□ -0.01
CLK3-224ENST00000568605 UPF2Q9HAU5 1272 aaKnown RBP15□□□□□ -0.01
CLK3-224ENST00000568605 XPNPEP3Q9NQH7 507 aa15□□□□□ -0.01
CLK3-224ENST00000568605 PDRG1Q9NUG6 133 aa15□□□□□ -0.01
CLK3-224ENST00000568605 ASTN1O14525 1302 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 GCOM1H8Y6P7 765 aaPredicted RBP14.99□□□□□ -0.01
CLK3-224ENST00000568605 DNM1LO00429 736 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 POLR2MP0CAP2 368 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 HSD17B4P51659 736 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 ANKRD1Q15327 319 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 CCDC144BQ3MJ40 725 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 C8orf34Q49A92 452 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 CMTR1Q8N1G2 835 aaKnown RBP14.99□□□□□ -0.01
CLK3-224ENST00000568605 CCDC82Q8N4S0 544 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 SYTL5Q8TDW5 730 aaPredicted RBP14.99□□□□□ -0.01
CLK3-224ENST00000568605 MORC4Q8TE76 937 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 RMDN3Q96TC7 470 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 SPC25Q9HBM1 224 aa14.99□□□□□ -0.01
CLK3-224ENST00000568605 EVCP57679 992 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 AKAP17AQ02040 695 aaKnown RBP14.98□□□□□ -0.01
CLK3-224ENST00000568605 ARHGEF16Q5VV41 709 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 PPP1R18Q6NYC8 613 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 CPLX2Q6PUV4 134 aaKnown RBP14.98□□□□□ -0.01
CLK3-224ENST00000568605 HEATR3Q7Z4Q2 680 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 UBE2Q1Q7Z7E8 422 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 RNF180Q86T96 592 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 FBXO16Q8IX29 292 aaPredicted RBP14.98□□□□□ -0.01
CLK3-224ENST00000568605 IWS1Q96ST2 819 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 C11orf49Q9H6J7 331 aa14.98□□□□□ -0.01
CLK3-224ENST00000568605 SYNRGQ9UMZ2 1314 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 DUSP11O75319 330 aaKnown RBP14.97□□□□□ -0.01
CLK3-224ENST00000568605 MYCNP04198 464 aaPredicted RBP14.97□□□□□ -0.01
CLK3-224ENST00000568605 EDNRBP24530 442 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 TOB2Q14106 344 aaPredicted RBP14.97□□□□□ -0.01
CLK3-224ENST00000568605 ANO1Q5XXA6 986 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 TEX2Q8IWB9 1127 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 SMARCC2Q8TAQ2 1214 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 IL17RAQ96F46 866 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 ZNF274Q96GC6 653 aaPredicted RBP14.97□□□□□ -0.01
CLK3-224ENST00000568605 PAWRQ96IZ0 340 aaKnown RBP14.97□□□□□ -0.01
CLK3-224ENST00000568605 PURBQ96QR8 312 aaKnown RBP14.97□□□□□ -0.01
CLK3-224ENST00000568605 KATNBL1Q9H079 304 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 WDR81Q562E7 1941 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 KAT6AQ92794 2004 aa14.97□□□□□ -0.01
CLK3-224ENST00000568605 LTBP2Q14767 1821 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 CPLX1O14810 134 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 OPLAHO14841 1288 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 CDC27P30260 824 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 TNFAIP2Q03169 654 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 STXBP2Q15833 593 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 NOL8Q76FK4 1167 aaKnown RBP14.96□□□□□ -0.01
CLK3-224ENST00000568605 EEPD1Q7L9B9 569 aa14.96□□□□□ -0.01
CLK3-224ENST00000568605 TRIM22Q8IYM9 498 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms