RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 KCTD2Q14681 263 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 PKN1Q16512 942 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 TKFCQ3LXA3 575 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 MAMDC4Q6UXC1 1216 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 FBXO11Q86XK2 927 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 RPTORQ8N122 1335 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 ANKRD35Q8N283 1001 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 TMTC2Q8N394 836 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 SYTL5Q8TDW5 730 aaPredicted RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 GPKOWQ92917 476 aaPredicted RBP eCLIP10.71□□□□□ -0.69
VPS35-206ENST00000565228 ZFP91Q96JP5 570 aaPredicted RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 DEFB118Q96PH6 123 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 TAAR1Q96RJ0 339 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 TINF2Q9BSI4 451 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 CRISPLD2Q9H0B8 497 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 PDGFCQ9NRA1 345 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 PDRG1Q9NUG6 133 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 DIS3Q9Y2L1 958 aaKnown RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 PNMA6FA0A0J9YX94 578 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 GOLGA8AA7E2F4 631 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 GOLGA8BA8MQT2 603 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 DHX16O60231 1041 aaKnown RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 GJB1P08034 283 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 CALML3P27482 149 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 PSMA5P28066 241 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 SMARCA1P28370 1054 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 HOXA13P31271 388 aaPredicted RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 COPB2P35606 906 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 GJA8P48165 433 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 HSD17B4P51659 736 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 ANAPC15P60006 121 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 SCRN1Q12765 414 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 RTN1Q16799 776 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 WWC2Q6AWC2 1192 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 TAPT1Q6NXT6 567 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 ARMCX2Q7L311 632 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 IL31RAQ8NI17 732 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 CTCFLQ8NI51 663 aaPredicted RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 MORC4Q8TE76 937 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 U2AF1L4Q8WU68 220 aaKnown RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 DDX11Q96FC9 970 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 AIFM3Q96NN9 605 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 AMNQ9BXJ7 453 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 ALDH8A1Q9H2A2 487 aaPredicted RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 CWC22Q9HCG8 908 aaKnown RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 BIN2Q9UBW5 565 aaPredicted RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 FBXO40Q9UH90 709 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 CTDP1Q9Y5B0 961 aaPredicted RBP10.7□□□□□ -0.7
VPS35-206ENST00000565228 PCDHA1Q9Y5I3 950 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 CYP46A1Q9Y6A2 500 aa10.7□□□□□ -0.7
VPS35-206ENST00000565228 DNAH12Q6ZR08 3092 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 ABCB11O95342 1321 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 KIAA1217Q5T5P2 1943 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 PTPDC1A2A3K4 754 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 MYADML2A6NDP7 307 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 POTEB2H3BUK9 544 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 MEIS2O14770 477 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 CTAGE5O15320 804 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 SGPL1O95470 568 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 EDNRBP24530 442 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 RBM25P49756 843 aaKnown RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 ALDH5A1P51649 535 aaPredicted RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 STK3Q13188 491 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 ME3Q16798 604 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 GJC2Q5T442 439 aaPredicted RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 RNF207Q6ZRF8 634 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 NOL8Q76FK4 1167 aaKnown RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 EEPD1Q7L9B9 569 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 ZNF467Q7Z7K2 595 aaPredicted RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 PHKBQ93100 1093 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 BACH2Q9BYV9 841 aa10.69□□□□□ -0.7
VPS35-206ENST00000565228 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 V9GY48 417 aaPredicted RBP10.69□□□□□ -0.7
VPS35-206ENST00000565228 DOCK5Q9H7D0 1870 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 STXBP3O00186 592 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 EDIL3O43854 480 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 RGS20O76081 388 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 ARIH2O95376 493 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 CALM1P0DP23 149 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 CALM2P0DP24 149 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 CALM3P0DP25 149 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 METAP2P50579 478 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS35-206ENST00000565228 UBXN2AP68543 259 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 USP17L6PQ6QN14 398 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 FBXO16Q8IX29 292 aaPredicted RBP10.68□□□□□ -0.7
VPS35-206ENST00000565228 NECAB1Q8N987 351 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 RGS22Q8NE09 1264 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 C22orf23Q9BZE7 217 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 HMX1Q9NP08 348 aaPredicted RBP10.68□□□□□ -0.7
VPS35-206ENST00000565228 OGDHLQ9ULD0 1010 aa10.68□□□□□ -0.7
VPS35-206ENST00000565228 NAP1L2Q9ULW6 460 aaPredicted RBP10.68□□□□□ -0.7
VPS35-206ENST00000565228 PFASO15067 1338 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 SYNGAP1Q96PV0 1343 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 CFBP00751 764 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 FDPSP14324 419 aaKnown RBP10.67□□□□□ -0.7
VPS35-206ENST00000565228 KIF5BP33176 963 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 RCAN1P53805 252 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 UBE2SQ16763 222 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 MFSD14CQ5VZR4 134 aa10.67□□□□□ -0.7
VPS35-206ENST00000565228 TRMT44Q8IYL2 757 aaKnown RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms