RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 TRIM47Q96LD4 638 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 DUSP9Q99956 384 aaKnown RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 EHD4Q9H223 541 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 THAP9Q9H5L6 903 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 ABHD10Q9NUJ1 306 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 ARFGEF1Q9Y6D6 1849 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 SPDYE4A6NLX3 237 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 FAM196BA6NMK8 535 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 USP17L10C9JJH3 530 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 TPM1P09493 284 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 FCER1AP12319 257 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 CLK2P49760 499 aaKnown RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 TCP10Q12799 353 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 CCDC96Q2M329 555 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 SHROOM1Q2M3G4 852 aaPredicted RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 GPATCH4Q5T3I0 446 aaKnown RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 PPP1R18Q6NYC8 613 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 FBXO38Q6PIJ6 1188 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 CALML4Q96GE6 196 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 DHTKD1Q96HY7 919 aaPredicted RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 IRX2Q9BZI1 471 aaPredicted RBP20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 BLOC1S4Q9NUP1 217 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 EXOC1Q9NV70 894 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 LRWD1Q9UFC0 647 aa20.79■□□□□ 0.92
PRPF40B-208ENST00000548436 EEF1GP26641 437 aaKnown RBP20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 TNNI2P48788 182 aa20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 ERVK-24P63145 666 aa20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 CBX1P83916 185 aa20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 MTMR8Q96EF0 704 aa20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 PNMA5Q96PV4 448 aa20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 NUP88Q99567 741 aaPredicted RBP20.78■□□□□ 0.92
PRPF40B-208ENST00000548436 DDTLA6NHG4 134 aaPredicted RBP20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 ZNF507Q8TCN5 953 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 POTEMA6NI47 508 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 LGALS16A8MUM7 142 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 ZBTB5O15062 677 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 AMPD3Q01432 767 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 TRIM14Q14142 442 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 C2CD5Q86YS7 1000 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 MB21D1Q8N884 522 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 FLAD1Q8NFF5 587 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 UBE2Q2Q8WVN8 375 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 P2RX5Q93086 422 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 HPS3Q969F9 1004 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 CCDC17Q96LX7 622 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 LZTFL1Q9NQ48 299 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 FAM198AQ9UFP1 575 aa20.77■□□□□ 0.92
PRPF40B-208ENST00000548436 CCNE1P24864 410 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 MAP3K9P80192 1104 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 DACT2Q5SW24 774 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 ANKRD40Q6AI12 368 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 CUL5Q93034 780 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 CCDC47Q96A33 483 aaKnown RBP20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 EEF2KMTQ96G04 330 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 NUDT12Q9BQG2 462 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 CARD6Q9BX69 1037 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 KRT9P35527 623 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 MCM6Q14566 821 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 TMEM266Q2M3C6 531 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 STRIP1Q5VSL9 837 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 PPP4R3AQ6IN85 833 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 SV2BQ7L1I2 683 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 SH3BP5LQ7L8J4 393 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 TMTC1Q8IUR5 882 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 CSGALNACT2Q8N6G5 542 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 KIAA0895Q8NCT3 520 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 FEZ1Q99689 392 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 MRIQ9BWK5 157 aa20.76■□□□□ 0.91
PRPF40B-208ENST00000548436 MYMKA6NI61 221 aa20.75■□□□□ 0.91
PRPF40B-208ENST00000548436 ECE2O60344 883 aa20.75■□□□□ 0.91
PRPF40B-208ENST00000548436 PDIA5Q14554 519 aa20.75■□□□□ 0.91
PRPF40B-208ENST00000548436 ACRBPQ8NEB7 543 aa20.75■□□□□ 0.91
PRPF40B-208ENST00000548436 NOC3LQ8WTT2 800 aaKnown RBP20.75■□□□□ 0.91
PRPF40B-208ENST00000548436 ZNF219Q9P2Y4 722 aaPredicted RBP20.75■□□□□ 0.91
PRPF40B-208ENST00000548436 EEF2P13639 858 aaKnown RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 RBM5P52756 815 aaKnown RBP eCLIP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 DHX36Q9H2U1 1008 aaKnown RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 MAGEC2Q9UBF1 373 aaPredicted RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 STK17AQ9UEE5 414 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 MRFAP1Q9Y605 127 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 A0A1W2PQC6 194 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 TTC26A0AVF1 554 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 PES1O00541 588 aaKnown RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 TADA3O75528 432 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 MRPL12P52815 198 aaKnown RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 CERKLQ49MI3 558 aaPredicted RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 CYP26C1Q6V0L0 522 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 MNS1Q8NEH6 495 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 LARP4BQ92615 738 aaKnown RBP20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 HAS1Q92839 578 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 GJA10Q969M2 543 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 IDI2Q9BXS1 227 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 PSTPIP2Q9H939 334 aa20.74■□□□□ 0.91
PRPF40B-208ENST00000548436 GOLGB1Q14789 3259 aaKnown RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 BICDL2A1A5D9 508 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 FKBP1AP62942 108 aaKnown RBP20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 COBLL1Q53SF7 1204 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 CNNM4Q6P4Q7 775 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 MKL1Q969V6 931 aa20.73■□□□□ 0.91
PRPF40B-208ENST00000548436 CDK5RAP3Q96JB5 506 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms