RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 ALG13Q9NP73 1137 aaKnown RBP16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 RIF1Q5UIP0 2472 aaKnown RBP16.68■□□□□ 0.26
NKX3-1-202ENST00000523261 KMT2EQ8IZD2 1858 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 USP17L12C9JPN9 530 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 USP17L21D6R901 530 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 SURF6O75683 361 aaKnown RBP16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 DUSP28Q4G0W2 176 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 TIGD5Q53EQ6 642 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 NFRKBQ6P4R8 1299 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 KIAA1211Q6ZU35 1233 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 RNF135Q8IUD6 432 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 C17orf80Q9BSJ5 609 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 VTA1Q9NP79 307 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 ATP8A2Q9NTI2 1148 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 CTNNA3Q9UI47 895 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 COG6Q9Y2V7 657 aa16.67■□□□□ 0.26
NKX3-1-202ENST00000523261 PKN1Q16512 942 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 TCTN1Q2MV58 587 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 CNKSR3Q6P9H4 555 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 BANK1Q8NDB2 785 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 ARHGAP45Q92619 1136 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 PBXIP1Q96AQ6 731 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 NYAP2Q9P242 653 aa16.66■□□□□ 0.26
NKX3-1-202ENST00000523261 MYO7AQ13402 2215 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 TMEM221A6NGB7 291 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 M0R296 226 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 CPT1AP50416 773 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 PTPN11Q06124 597 aaPredicted RBP16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 TTF1Q15361 905 aaPredicted RBP16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 SMAD2Q15796 467 aaKnown RBP16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 PTPROQ16827 1216 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 TCEAL5Q5H9L2 206 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 EP400NLQ6ZTU2 488 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 AFAP1L1Q8TED9 768 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 CRBNQ96SW2 442 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 GPHNQ9NQX3 736 aaPredicted RBP16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 RNF146Q9NTX7 359 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 FEM1BQ9UK73 627 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 NOP58Q9Y2X3 529 aaKnown RBP16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 DCHS1Q96JQ0 3298 aa16.65■□□□□ 0.26
NKX3-1-202ENST00000523261 LCTP09848 1927 aa16.64■□□□□ 0.26
NKX3-1-202ENST00000523261 FAM186AA6NE01 2351 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 ABHD14A-ACY1A0A1B0GW23 586 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 CXCL10P02778 98 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 CT47B1P0C2W7 299 aaPredicted RBP16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 LTBRP36941 435 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 FAM117BQ6P1L5 589 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 TRIM67Q6ZTA4 783 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 ERMP1Q7Z2K6 904 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 SUGP1Q8IWZ8 645 aaKnown RBP16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 AMOTL1Q8IY63 956 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 CAGE1Q8TC20 777 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 MORC4Q8TE76 937 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 POP1Q99575 1024 aaKnown RBP16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 PLXNA3P51805 1871 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 MYO15AQ9UKN7 3530 aa16.64■□□□□ 0.25
NKX3-1-202ENST00000523261 BCAR3O75815 825 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 MBD4O95243 580 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 ATP8B2P98198 1209 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 CCDC155Q8N6L0 562 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 CTAGE1Q96RT6 745 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 WDR11Q9BZH6 1224 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 CLDND1Q9NY35 253 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 NOD1Q9Y239 953 aa16.63■□□□□ 0.25
NKX3-1-202ENST00000523261 MYH4Q9Y623 1939 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 NBNO60934 754 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 FDX1P10109 184 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 SELPP16109 830 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 EPC2Q52LR7 807 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 LRRC8DQ7L1W4 858 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 TRMT2AQ8IZ69 625 aaKnown RBP16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 FBXL6Q8N531 539 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 OR6J1Q8NGC5 347 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 NSUN3Q9H649 340 aaKnown RBP16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 INSL6Q9Y581 213 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 ZBED9Q6R2W3 1325 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 CACNA1BQ00975 2339 aa16.62■□□□□ 0.25
NKX3-1-202ENST00000523261 RBM47A0AV96 593 aaKnown RBP16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 H3BNC9 293 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 RBAK-RBAKDNI3L0D1 243 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 MBTPS2O43462 519 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 EFCAB14O75071 495 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 RASA1P20936 1047 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 PTGISQ16647 500 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 TKFCQ3LXA3 575 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 SLFNL1Q499Z3 407 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 CTR9Q6PD62 1173 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 RPAINQ86UA6 219 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 SP7Q8TDD2 431 aaPredicted RBP16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 TRERF1Q96PN7 1200 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 PURBQ96QR8 312 aaKnown RBP16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 CYP39A1Q9NYL5 469 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 CLIP2Q9UDT6 1046 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 TNNQ9UQP3 1299 aa16.61■□□□□ 0.25
NKX3-1-202ENST00000523261 KPNA6O60684 536 aa16.6■□□□□ 0.25
NKX3-1-202ENST00000523261 PARNO95453 639 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-202ENST00000523261 RARSP54136 660 aaKnown RBP16.6■□□□□ 0.25
NKX3-1-202ENST00000523261 HTRA4P83105 476 aaPredicted RBP16.6■□□□□ 0.25
NKX3-1-202ENST00000523261 RBL2Q08999 1139 aa16.6■□□□□ 0.25
NKX3-1-202ENST00000523261 CTC1Q2NKJ3 1217 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms