RNA–Protein interactions for RNA: ENST00000511421.5

SH3RF1-205, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 1,657 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-205ENST00000511421 FERMT2Q96AC1 680 aa13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 TSEN34Q9BSV6 310 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 MYL10Q9BUA6 226 aa13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 AMNQ9BXJ7 453 aa13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 UPF3AQ9H1J1 476 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 PDGFCQ9NRA1 345 aa13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 ZMYND8Q9ULU4 1186 aaPredicted RBP13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 GNEQ9Y223 722 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 MRPL11Q9Y3B7 192 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-205ENST00000511421 OPLAHO14841 1288 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 CTAGE5O15320 804 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 EDNRBP24530 442 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 CST5P28325 142 aaPredicted RBP13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 RTP1P59025 263 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 TNFAIP2Q03169 654 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 DNERQ8NFT8 737 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 SYTL5Q8TDW5 730 aaPredicted RBP13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 NUP133Q8WUM0 1156 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 KCNB2Q92953 911 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 NEK1Q96PY6 1258 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 PIGSQ96S52 555 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 LRRC2Q9BYS8 371 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 VTA1Q9NP79 307 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 COL20A1Q9P218 1284 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 BAZ2BQ9UIF8 2168 aaKnown RBP13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 TRIOBPQ9H2D6 2365 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 SMPD1P17405 629 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 SYN1P17600 705 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 EXOSC10Q01780 885 aaKnown RBP13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 GHRHRQ02643 423 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 KCNA10Q16322 511 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 ADCK5Q3MIX3 580 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 TMEM63BQ5T3F8 832 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 C1orf53Q5VUE5 145 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 IQSEC1Q6DN90 963 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 MCF2L2Q86YR7 1114 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 DNAH12Q6ZR08 3092 aa13.5□□□□□ -0.25
SH3RF1-205ENST00000511421 RANBP2P49792 3224 aaKnown RBP13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 A0A1W2PQ45 241 aaPredicted RBP13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 A0A1W2PQY0 241 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 RBM47A0AV96 593 aaKnown RBP13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 MOXD2PA6NHM9 499 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 CCDC69A6NI79 296 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 C6orf222P0C671 652 aaPredicted RBP13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 PTGS1P23219 599 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 ACLYP53396 1101 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 NFXL1Q6ZNB6 911 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 SGMS1Q86VZ5 419 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 HOMER1Q86YM7 354 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 TAAR1Q96RJ0 339 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 GDF15Q99988 308 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 PCDH10Q9P2E7 1040 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 RBM27Q9P2N5 1060 aaKnown RBP13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 PCDHA1Q9Y5I3 950 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 LRRC37A2A6NM11 1700 aa13.49□□□□□ -0.25
SH3RF1-205ENST00000511421 PNMA6FA0A0J9YX94 578 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 RXRAP19793 462 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 SMARCA1P28370 1054 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 KIF5BP33176 963 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 DHX32Q7L7V1 743 aaKnown RBP13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 CTCFLQ8NI51 663 aaPredicted RBP13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 SPZ1Q9BXG8 430 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 SPC25Q9HBM1 224 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 ATP11BQ9Y2G3 1177 aa13.48□□□□□ -0.25
SH3RF1-205ENST00000511421 PLEKHA8P1O95397 391 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 HSPA4P34932 840 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 HSD17B4P51659 736 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 PDE4DQ08499 809 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 KRT32Q14532 448 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 TRIM60Q495X7 471 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 GNASQ5JWF2 1037 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 NOL8Q76FK4 1167 aaKnown RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 TLK2Q86UE8 772 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 SRBD1Q8N5C6 995 aaKnown RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 PCSK9Q8NBP7 692 aaKnown RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 TCEANC2Q96MN5 208 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 Q9Y3F1 56 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 SLC12A7Q9Y666 1083 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 MYH6P13533 1939 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 DYNC1LI2O43237 492 aaPredicted RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 CFBP00751 764 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 ASGR1P07306 291 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 CALM1P0DP23 149 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 CALM2P0DP24 149 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 CALM3P0DP25 149 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 GNAQP50148 359 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 BEX3Q00994 111 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 DUSP28Q4G0W2 176 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 RAB11FIP4Q86YS3 637 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 NSUN6Q8TEA1 469 aaKnown RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 RMDN3Q96TC7 470 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 MPHOSPH6Q99547 160 aaKnown RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 LZTS2Q9BRK4 669 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 WDR11Q9BZH6 1224 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 MAP3K20Q9NYL2 800 aaKnown RBP13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 SNX14Q9Y5W7 946 aa13.47□□□□□ -0.25
SH3RF1-205ENST00000511421 B4DLN1 442 aa13.46□□□□□ -0.26
SH3RF1-205ENST00000511421 REC8O95072 547 aa13.46□□□□□ -0.26
SH3RF1-205ENST00000511421 BMP8BP34820 402 aa13.46□□□□□ -0.26
SH3RF1-205ENST00000511421 MAGEA10P43363 369 aaPredicted RBP13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms