RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 ACBD3Q9H3P7 528 aa8.56□□□□□ -1.04
NUP54-209ENST00000510569 RTEL1Q9NZ71 1219 aa8.56□□□□□ -1.04
NUP54-209ENST00000510569 ANKRD34BA5PLL1 514 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 C2orf71A6NGG8 1288 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 SEPHS1P49903 392 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 DPY19L1Q2PZI1 675 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 KIAA1211LQ6NV74 962 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 VHLLQ6RSH7 139 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 SP8Q8IXZ3 490 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 CPLX3Q8WVH0 158 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 APEX2Q9UBZ4 518 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 PLA2G2DQ9UNK4 145 aa8.55□□□□□ -1.04
NUP54-209ENST00000510569 SASH1O94885 1247 aa8.54□□□□□ -1.04
NUP54-209ENST00000510569 ZNF143P52747 638 aaPredicted RBP8.54□□□□□ -1.04
NUP54-209ENST00000510569 PRR5P85299 388 aa8.54□□□□□ -1.04
NUP54-209ENST00000510569 RBM10P98175 930 aaKnown RBP8.54□□□□□ -1.04
NUP54-209ENST00000510569 TSPAN17Q96FV3 270 aa8.54□□□□□ -1.04
NUP54-209ENST00000510569 LUC7LQ9NQ29 371 aaKnown RBP8.54□□□□□ -1.04
NUP54-209ENST00000510569 FBLN5Q9UBX5 448 aa8.54□□□□□ -1.04
NUP54-209ENST00000510569 INPP5FQ9Y2H2 1132 aa8.54□□□□□ -1.04
NUP54-209ENST00000510569 TRBV23OR9-2A0A075B6M9 112 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 F8W031 263 aaPredicted RBP8.53□□□□□ -1.04
NUP54-209ENST00000510569 LIMS1P48059 325 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 CABP7Q86V35 215 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 LZTR1Q8N653 840 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 TP53I13Q8NBR0 393 aaPredicted RBP8.53□□□□□ -1.04
NUP54-209ENST00000510569 RELTQ969Z4 430 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 MTA3Q9BTC8 594 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 CCSER2Q9H7U1 834 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 SUGT1Q9Y2Z0 365 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 EMC9Q9Y3B6 208 aa8.53□□□□□ -1.04
NUP54-209ENST00000510569 ZC3H12DA2A288 527 aaKnown RBP8.52□□□□□ -1.05
NUP54-209ENST00000510569 PAMP19021 973 aa8.52□□□□□ -1.05
NUP54-209ENST00000510569 VMACQ2NL98 169 aa8.52□□□□□ -1.05
NUP54-209ENST00000510569 NLGN1Q8N2Q7 840 aa8.52□□□□□ -1.05
NUP54-209ENST00000510569 CRACR2BQ8N4Y2 399 aaPredicted RBP8.52□□□□□ -1.05
NUP54-209ENST00000510569 NETO2Q8NC67 525 aa8.52□□□□□ -1.05
NUP54-209ENST00000510569 OTOL1A6NHN0 477 aaPredicted RBP8.51□□□□□ -1.05
NUP54-209ENST00000510569 FFAR3O14843 346 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 NAT2P11245 290 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 ATF2P15336 505 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 TRIM26Q12899 539 aaPredicted RBP8.51□□□□□ -1.05
NUP54-209ENST00000510569 NFIXQ14938 502 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 NCAPHQ15003 741 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 POMZP3Q6PJE2 187 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 COPS5Q92905 334 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 AKT3Q9Y243 479 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 RWDD3Q9Y3V2 267 aa8.51□□□□□ -1.05
NUP54-209ENST00000510569 NPHP3-ACAD11A0A0J9YXS1 232 aa8.5□□□□□ -1.05
NUP54-209ENST00000510569 PPP1R11O60927 126 aaPredicted RBP8.5□□□□□ -1.05
NUP54-209ENST00000510569 PLA2G1BP04054 148 aaKnown RBP8.5□□□□□ -1.05
NUP54-209ENST00000510569 ASGR2P07307 311 aa8.5□□□□□ -1.05
NUP54-209ENST00000510569 ATF4P18848 351 aaPredicted RBP8.5□□□□□ -1.05
NUP54-209ENST00000510569 HTRA3P83110 453 aa8.5□□□□□ -1.05
NUP54-209ENST00000510569 VWA3BQ502W6 1294 aa8.5□□□□□ -1.05
NUP54-209ENST00000510569 CPNE8Q86YQ8 564 aa8.5□□□□□ -1.05
NUP54-209ENST00000510569 DBR1Q9UK59 544 aaKnown RBP8.5□□□□□ -1.05
NUP54-209ENST00000510569 NCAM1P13591 858 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 BUD31P41223 144 aaPredicted RBP8.49□□□□□ -1.05
NUP54-209ENST00000510569 SLC9A5Q14940 896 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 BVESQ8NE79 360 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 FEZF2Q8TBJ5 459 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 FNIP1Q8TF40 1166 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 ANAPC16Q96DE5 110 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 APBA2Q99767 749 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 KRTAP4-2Q9BYR5 136 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.49□□□□□ -1.05
NUP54-209ENST00000510569 GULP1Q9UBP9 304 aa8.49□□□□□ -1.05
NUP54-209ENST00000510569 C7orf72A4D263 438 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 FOXD2O60548 495 aaPredicted RBP8.48□□□□□ -1.05
NUP54-209ENST00000510569 KCNH1O95259 989 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 FOXO4P98177 505 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 WWC2Q6AWC2 1192 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 B3GNT8Q7Z7M8 397 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 TRIM59Q8IWR1 403 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 SYT8Q8NBV8 401 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 CXorf38Q8TB03 319 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 ALG3Q92685 438 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 PEX11GQ96HA9 241 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 MRGPRX3Q96LB0 322 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 MMP19Q99542 508 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 NUDT5Q9UKK9 219 aa8.48□□□□□ -1.05
NUP54-209ENST00000510569 NPHS1O60500 1241 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 PMLP29590 882 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 SCRN1Q12765 414 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 MBLAC2Q68D91 279 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 SAPCD2Q86UD0 394 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 CPA5Q8WXQ8 436 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 KRTAP9-3Q9BYQ3 159 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 RXFP1Q9HBX9 757 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 CLEC1BQ9P126 229 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 FAN1Q9Y2M0 1017 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 PMF1-BGLAPU3KQ54 211 aa8.47□□□□□ -1.05
NUP54-209ENST00000510569 ZBTB7AO95365 584 aa8.46□□□□□ -1.06
NUP54-209ENST00000510569 PLS3P13797 630 aa8.46□□□□□ -1.06
NUP54-209ENST00000510569 MC3RP41968 323 aa8.46□□□□□ -1.06
NUP54-209ENST00000510569 GTF2IRD2BQ6EKJ0 949 aa8.46□□□□□ -1.06
NUP54-209ENST00000510569 GTF2IRD2Q86UP8 949 aa8.46□□□□□ -1.06
NUP54-209ENST00000510569 SH3D21A4FU49 640 aa8.45□□□□□ -1.06
NUP54-209ENST00000510569 SYN1P17600 705 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms