RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 SPATA31A7Q8IWB4 1347 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 FOSP01100 380 aaPredicted RBP12.18□□□□□ -0.46
HDAC6-228ENST00000486227 UBXN2AP68543 259 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 ASIC2Q16515 512 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 FAM26FQ5R3K3 315 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 DPH6Q7L8W6 267 aa12.18□□□□□ -0.46
HDAC6-228ENST00000486227 RICTORQ6R327 1708 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 PXDNQ92626 1479 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 NDUFAB1O14561 156 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 ZEB2O60315 1214 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 BMP3P12645 472 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 PRPHP41219 470 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 OXER1Q8TDS5 423 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 TSGA10Q9BZW7 698 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 MED4Q9NPJ6 270 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 PANK4Q9NVE7 773 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 MAN1B1Q9UKM7 699 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 CCPG1Q9ULG6 757 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 M0QZ92 97 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 LAD1O00515 517 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 KMT5BQ4FZB7 885 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 RC3H1Q5TC82 1133 aaKnown RBP12.17□□□□□ -0.46
HDAC6-228ENST00000486227 CEP57Q86XR8 500 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 GLG1Q92896 1179 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 PNPLA7Q6ZV29 1317 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 FAM196BA6NMK8 535 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 EEF2P13639 858 aaKnown RBP12.17□□□□□ -0.46
HDAC6-228ENST00000486227 TNFAIP3P21580 790 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 MIGA2Q7L4E1 593 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 HOOK3Q86VS8 718 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 NCAPG2Q86XI2 1143 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 CCDC114Q96M63 670 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 ABT1Q9ULW3 272 aaKnown RBP12.17□□□□□ -0.46
HDAC6-228ENST00000486227 REREQ9P2R6 1566 aa12.17□□□□□ -0.46
HDAC6-228ENST00000486227 A0A0G2JLW4 131 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 ERCC5P28715 1186 aaPredicted RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 USP14P54578 494 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 UBE2SQ16763 222 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 WHAMMP3Q1A5X7 153 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 TYW1BQ6NUM6 668 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 SGMS1Q86VZ5 419 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 MCF2L2Q86YR7 1114 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 FAM71BQ8TC56 605 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 NSUN4Q96CB9 384 aaKnown RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 KLHL30Q0D2K2 578 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 UBN2Q6ZU65 1347 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 IKBKBO14920 756 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 CTIFO43310 598 aaKnown RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 SEC31AO94979 1220 aaKnown RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 KRT5P13647 590 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 CNGA1P29973 690 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 CRKP46108 304 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 IREB2P48200 963 aaKnown RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 RNASE9P60153 205 aaKnown RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 BARGINQ6ZT62 677 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 LARP4BQ92615 738 aaKnown RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 TRIM6Q9C030 488 aaPredicted RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 MLXIPQ9HAP2 919 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 PRDM4Q9UKN5 801 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 KDM6AO15550 1401 aaPredicted RBP12.16□□□□□ -0.46
HDAC6-228ENST00000486227 MROH7-TTC4A0A0A0MT08 1334 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 PTPREP23469 700 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 STRN3Q13033 797 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 KCTD2Q14681 263 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 CFAP58Q5T655 872 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 ARHGEF16Q5VV41 709 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 TTC16Q8NEE8 873 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 AK8Q96MA6 479 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 EXOC7Q9UPT5 735 aa12.16□□□□□ -0.46
HDAC6-228ENST00000486227 STK36Q9NRP7 1315 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 CCDC151A5D8V7 595 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 USP17L5A8MUK1 530 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 MYZAPP0CAP1 466 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 MAP2K2P36507 400 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 PPM1FP49593 454 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA8FQ08AF8 430 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA8DPQ0D2H9 430 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 LONRF2Q1L5Z9 754 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 FOXP4Q8IVH2 680 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-228ENST00000486227 PSMB7Q99436 277 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 MTA3Q9BTC8 594 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 TDRD3Q9H7E2 651 aaKnown RBP12.15□□□□□ -0.46
HDAC6-228ENST00000486227 ARHGAP25P42331 645 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 CYP2J2P51589 502 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 WDR44Q5JSH3 913 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 PRR5LQ6MZQ0 368 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 PODNQ7Z5L7 613 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 IFT81Q8WYA0 676 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 GOLPH3LQ9H4A5 285 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 GOLGA6BA6NDN3 693 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 STX10O60499 249 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 COPB1P53618 953 aaKnown RBP12.15□□□□□ -0.46
HDAC6-228ENST00000486227 NAA30Q147X3 362 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-228ENST00000486227 FAM47CQ5HY64 1035 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 ZNF710Q8N1W2 664 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 SECISBP2LQ93073 1101 aaKnown RBP12.15□□□□□ -0.46
HDAC6-228ENST00000486227 CCDC51Q96ER9 411 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 CEP95Q96GE4 821 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 PDE11AQ9HCR9 933 aa12.15□□□□□ -0.46
HDAC6-228ENST00000486227 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms