RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SENP6Q9GZR1 1112 aaPredicted RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 IGFLR1Q9H665 355 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 DNAJB12Q9NXW2 375 aaKnown RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 THEGQ9P2T0 379 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 ZNF112Q9UJU3 913 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 GJD2Q9UKL4 321 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 MYH3P11055 1940 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 CDH23Q9H251 3354 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 ANKRD18BA2A2Z9 1011 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 ELL2O00472 640 aaPredicted RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 TNFRSF10BO14763 440 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 DDX58O95786 925 aaKnown RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 TARSP26639 723 aaKnown RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 GYG1P46976 350 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 TCP10Q12799 353 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 CHAF1AQ13111 956 aaPredicted RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 CCDC85BQ15834 202 aaPredicted RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 FAM110CQ1W6H9 321 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 NOL9Q5SY16 702 aaKnown RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 MAP3K21Q5TCX8 1036 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 APOBEC3HQ6NTF7 200 aaKnown RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 CCDC82Q8N4S0 544 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 BADQ92934 168 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 CLP1Q92989 425 aaKnown RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 TEKT1Q969V4 418 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 COL26A1Q96A83 441 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 PNMA5Q96PV4 448 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 EPHX3Q9H6B9 360 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 PRDM5Q9NQX1 630 aaPredicted RBP6.78□□□□□ -1.32
PTPN4-210ENST00000485247 SLC45A1Q9Y2W3 748 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 AFG3L2Q9Y4W6 797 aa6.78□□□□□ -1.32
PTPN4-210ENST00000485247 PI4KAP2A4QPH2 592 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 TRIM75PA6NK02 468 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 FAM229AH3BQW9 127 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 CSF1RP07333 972 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 PTPRAP18433 802 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 CCND3P30281 292 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-210ENST00000485247 HIBADHP31937 336 aaKnown RBP6.77□□□□□ -1.33
PTPN4-210ENST00000485247 RTP1P59025 263 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 HDLBPQ00341 1268 aaKnown RBP6.77□□□□□ -1.33
PTPN4-210ENST00000485247 CACNB2Q08289 660 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-210ENST00000485247 NEXNQ0ZGT2 675 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 FKBP1CQ5VVH2 108 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 C16orf46Q6P387 395 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 PI4KAP1Q8N8J0 262 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 FAM151AQ8WW52 585 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 ZDHHC15Q96MV8 337 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 ZNF576Q9H609 170 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.77□□□□□ -1.33
PTPN4-210ENST00000485247 PICK1Q9NRD5 415 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 ATP11BQ9Y2G3 1177 aa6.77□□□□□ -1.33
PTPN4-210ENST00000485247 RPAP1Q9BWH6 1393 aaPredicted RBP6.77□□□□□ -1.33
PTPN4-210ENST00000485247 ZBTB42B2RXF5 422 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 SASH3O75995 380 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 MAP3K6O95382 1288 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 SPATA31C1P0DKV0 1188 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 ZKSCAN1P17029 563 aaPredicted RBP6.76□□□□□ -1.33
PTPN4-210ENST00000485247 IFIT5Q13325 482 aaKnown RBP6.76□□□□□ -1.33
PTPN4-210ENST00000485247 NAA30Q147X3 362 aaPredicted RBP6.76□□□□□ -1.33
PTPN4-210ENST00000485247 TMEM31Q5JXX7 168 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 TREML2Q5T2D2 321 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 KSR2Q6VAB6 950 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 SCYL3Q8IZE3 742 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 RGL4Q8IZJ4 473 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 NUDT8Q8WV74 236 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 RNPC3Q96LT9 517 aaKnown RBP6.76□□□□□ -1.33
PTPN4-210ENST00000485247 PLA2G12BQ9BX93 195 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 AGTPBP1Q9UPW5 1226 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 KCNMB2Q9Y691 235 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 LTBP2Q14767 1821 aa6.76□□□□□ -1.33
PTPN4-210ENST00000485247 PEX10O60683 326 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 FRAT2O75474 233 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 RARAP10276 462 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 GCLCP48506 637 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 MRE11P49959 708 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 NFIAQ12857 509 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 TRIM26Q12899 539 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 CCL14Q16627 93 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 PSAPL1Q6NUJ1 521 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 DHX32Q7L7V1 743 aaKnown RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 CCDC84Q86UT8 332 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 TIFAQ96CG3 184 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 FAM84BQ96KN1 310 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 JPH1Q9HDC5 661 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 C11orf16Q9NQ32 467 aa6.75□□□□□ -1.33
PTPN4-210ENST00000485247 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 TCF20Q9UGU0 1960 aaKnown RBP6.75□□□□□ -1.33
PTPN4-210ENST00000485247 MAST2Q6P0Q8 1798 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 LOC100996750A0A140TA64 210 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 FAM86C2PA6NEL3 165 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 LILRB5O75023 590 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 XRCC5P13010 732 aaKnown RBP6.74□□□□□ -1.33
PTPN4-210ENST00000485247 AFF1P51825 1210 aaKnown RBP6.74□□□□□ -1.33
PTPN4-210ENST00000485247 EPHB4P54760 987 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 CASP7P55210 303 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 TFF2Q03403 129 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 PLAURQ03405 335 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 GCKRQ14397 625 aa6.74□□□□□ -1.33
PTPN4-210ENST00000485247 TRIP4Q15650 581 aaPredicted RBP6.74□□□□□ -1.33
PTPN4-210ENST00000485247 TAF7LQ5H9L4 462 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms