RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 CAP1Q01518 475 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 BAATQ14032 418 aaPredicted RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 SRBD1Q8N5C6 995 aaKnown RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 MYL10Q9BUA6 226 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 PAK6Q9NQU5 681 aaPredicted RBP12.34□□□□□ -0.43
UBR4-208ENST00000459947 FAM184BQ9ULE4 1060 aa12.34□□□□□ -0.43
UBR4-208ENST00000459947 NKRFO15226 690 aaKnown RBP eCLIP12.33□□□□□ -0.44
UBR4-208ENST00000459947 SEPT4O43236 478 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 AKR1A1P14550 325 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 KCNV1Q6PIU1 500 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 SPC25Q9HBM1 224 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 PIK3CDO00329 1044 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 PFKFB2O60825 505 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 SSRP1Q08945 709 aaKnown RBP12.33□□□□□ -0.44
UBR4-208ENST00000459947 TOB2Q14106 344 aaPredicted RBP12.33□□□□□ -0.44
UBR4-208ENST00000459947 MUM1L1Q5H9M0 696 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 GALNT17Q6IS24 598 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 ARRDC4Q8NCT1 418 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 TCEANC2Q96MN5 208 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 UPF3BQ9BZI7 483 aaKnown RBP12.33□□□□□ -0.44
UBR4-208ENST00000459947 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.33□□□□□ -0.44
UBR4-208ENST00000459947 DOCK3Q8IZD9 2030 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 PEX10O60683 326 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 PLEKHA8P1O95397 391 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 GJA8P48165 433 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 NEK4P51957 841 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 PDE4DQ08499 809 aa12.33□□□□□ -0.44
UBR4-208ENST00000459947 ECM2O94769 699 aaPredicted RBP12.32□□□□□ -0.44
UBR4-208ENST00000459947 ALDH5A1P51649 535 aaPredicted RBP12.32□□□□□ -0.44
UBR4-208ENST00000459947 SNAP25P60880 206 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 CACNB2Q08289 660 aaPredicted RBP12.32□□□□□ -0.44
UBR4-208ENST00000459947 SMARCC2Q8TAQ2 1214 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 SEZ6LQ9BYH1 1024 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 DDX20Q9UHI6 824 aaKnown RBP12.32□□□□□ -0.44
UBR4-208ENST00000459947 Q9Y3F1 56 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 KIF3AQ9Y496 699 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 CYTH3O43739 400 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 DEXIO95424 95 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 SGPL1O95470 568 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 GNA11P29992 359 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 RPS6P62753 249 aaKnown RBP12.32□□□□□ -0.44
UBR4-208ENST00000459947 ARMCX2Q7L311 632 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 NFIBO00712 420 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 SCG2P13521 617 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 CALML3P27482 149 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 AP3B2Q13367 1082 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 PFKFB3Q16875 520 aaPredicted RBP12.32□□□□□ -0.44
UBR4-208ENST00000459947 UNC93B1Q9H1C4 597 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 C6orf50Q9HD87 102 aa12.32□□□□□ -0.44
UBR4-208ENST00000459947 PGK2P07205 417 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 NAPAP54920 295 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 IQSEC1Q6DN90 963 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 SYTL5Q8TDW5 730 aaPredicted RBP12.31□□□□□ -0.44
UBR4-208ENST00000459947 CRISPLD2Q9H0B8 497 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 LIMCH1Q9UPQ0 1083 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 RARBP10826 455 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 CCDC144CPQ8IYA2 1237 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 LLPHQ9BRT6 129 aaKnown RBP12.31□□□□□ -0.44
UBR4-208ENST00000459947 BACH2Q9BYV9 841 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 CPVLQ9H3G5 476 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 CPA1P15085 419 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 CCND2P30279 289 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 ADCY7P51828 1080 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 FUT2Q10981 343 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 CCL14Q16627 93 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 BRDTQ58F21 947 aaPredicted RBP12.31□□□□□ -0.44
UBR4-208ENST00000459947 HEATR3Q7Z4Q2 680 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 TBC1D32Q96NH3 1257 aa12.31□□□□□ -0.44
UBR4-208ENST00000459947 ZEB2O60315 1214 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 CFBP00751 764 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 EDNRBP24530 442 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 AK2P54819 239 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 ACVR2BQ13705 512 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 STXBP2Q15833 593 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 ARHGEF16Q5VV41 709 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 PSTPIP2Q9H939 334 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 BARHL2Q9NY43 387 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 SOWAHBA6NEL2 793 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 RXRAP19793 462 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 U2AF1L4Q8WU68 220 aaKnown RBP12.3□□□□□ -0.44
UBR4-208ENST00000459947 RIC8AQ9NPQ8 531 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 OGDHLQ9ULD0 1010 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 FRMPD4Q14CM0 1322 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 LRRC37A2A6NM11 1700 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 TFRCP02786 760 aaKnown RBP12.3□□□□□ -0.44
UBR4-208ENST00000459947 RGS19P49795 217 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 IFFO2Q5TF58 517 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 SLC30A10Q6XR72 485 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 SCFD2Q8WU76 684 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 CDHR1Q96JP9 859 aa12.3□□□□□ -0.44
UBR4-208ENST00000459947 FAM217BQ9NTX9 383 aaPredicted RBP12.3□□□□□ -0.44
UBR4-208ENST00000459947 ZHX1Q9UKY1 873 aaPredicted RBP12.3□□□□□ -0.44
UBR4-208ENST00000459947 V9GY48 417 aaPredicted RBP12.3□□□□□ -0.44
UBR4-208ENST00000459947 SPDYE3A6NKU9 549 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 HMGN5P82970 282 aaKnown RBP12.29□□□□□ -0.44
UBR4-208ENST00000459947 GNPTABQ3T906 1256 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 RMDN3Q96TC7 470 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 TSEN34Q9BSV6 310 aaKnown RBP12.29□□□□□ -0.44
UBR4-208ENST00000459947 HTATIP2Q9BUP3 242 aa12.29□□□□□ -0.44
UBR4-208ENST00000459947 RBM47A0AV96 593 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms