RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NAALADL2Q58DX5 795 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 C9orf131Q5VYM1 1079 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 NLGN1Q8N2Q7 840 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 ZNF526Q8TF50 670 aaPredicted RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 SREK1Q8WXA9 508 aaKnown RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 MCMBPQ9BTE3 642 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 BDH2Q9BUT1 245 aa6.28□□□□□ -1.4
VPS29-202ENST00000447578 PPP1R1BQ9UD71 204 aaPredicted RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 DBR1Q9UK59 544 aaKnown RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 ZNF214Q9UL59 606 aaPredicted RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 SF3B6Q9Y3B4 125 aaKnown RBP6.28□□□□□ -1.4
VPS29-202ENST00000447578 ITGA4P13612 1032 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 L1CAMP32004 1257 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 FANCCQ00597 558 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 PLP2Q04941 152 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 RTP5Q14D33 572 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 CCDC81Q6ZN84 652 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 RBBP8NLQ8NC74 664 aaPredicted RBP6.27□□□□□ -1.41
VPS29-202ENST00000447578 ADCY4Q8NFM4 1077 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 SPATA25Q9BR10 227 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 FBLN5Q9UBX5 448 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 PMF1-BGLAPU3KQ54 211 aa6.27□□□□□ -1.41
VPS29-202ENST00000447578 TBC1D8O95759 1140 aa6.26□□□□□ -1.41
VPS29-202ENST00000447578 ASGR2P07307 311 aa6.26□□□□□ -1.41
VPS29-202ENST00000447578 RACK1P63244 317 aaKnown RBP6.26□□□□□ -1.41
VPS29-202ENST00000447578 CAP1Q01518 475 aa6.26□□□□□ -1.41
VPS29-202ENST00000447578 POU4F1Q01851 419 aa6.26□□□□□ -1.41
VPS29-202ENST00000447578 NLGN2Q8NFZ4 835 aa6.26□□□□□ -1.41
VPS29-202ENST00000447578 FAN1Q9Y2M0 1017 aa6.26□□□□□ -1.41
VPS29-202ENST00000447578 PPP1R11O60927 126 aaPredicted RBP6.25□□□□□ -1.41
VPS29-202ENST00000447578 VAMP4O75379 141 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 HDLBPQ00341 1268 aaKnown RBP6.25□□□□□ -1.41
VPS29-202ENST00000447578 TCEAL1Q15170 157 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 NT5DC1Q5TFE4 455 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 ERICH6BQ5W0A0 696 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 LIPIQ6XZB0 460 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 FERMT3Q86UX7 667 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 PCDHB10Q9UN67 800 aa6.25□□□□□ -1.41
VPS29-202ENST00000447578 DIS3Q9Y2L1 958 aaKnown RBP6.25□□□□□ -1.41
VPS29-202ENST00000447578 OVOL3O00110 214 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 STXBP3O00186 592 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 GLI4P10075 376 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 NCAM1P13591 858 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 CORO7P57737 925 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 HTRA3P83110 453 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 DLX2Q07687 328 aaPredicted RBP6.24□□□□□ -1.41
VPS29-202ENST00000447578 SF3A1Q15459 793 aaKnown RBP6.24□□□□□ -1.41
VPS29-202ENST00000447578 DPY19L1Q2PZI1 675 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 SAPCD2Q86UD0 394 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 ALG3Q92685 438 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 HAUS7Q99871 368 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 RWDD3Q9Y3V2 267 aa6.24□□□□□ -1.41
VPS29-202ENST00000447578 A0A087WZG4 1122 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 AURKAO14965 403 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 PMLP29590 882 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 GNPTABQ3T906 1256 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 RCSD1Q6JBY9 416 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 CPNE8Q86YQ8 564 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 FGD4Q96M96 766 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 NOX5Q96PH1 765 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 RNF38Q9H0F5 515 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 GINM1Q9NU53 330 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 USP40Q9NVE5 1235 aa6.23□□□□□ -1.41
VPS29-202ENST00000447578 DDX41Q9UJV9 622 aaKnown RBP6.23□□□□□ -1.41
VPS29-202ENST00000447578 EFEMP1Q12805 493 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 UBXN11Q5T124 520 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 EEF1DP3Q658K8 133 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 ADAT2Q7Z6V5 191 aaKnown RBP6.22□□□□□ -1.41
VPS29-202ENST00000447578 NT5DC4Q86YG4 428 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 DDX1Q92499 740 aaKnown RBP6.22□□□□□ -1.41
VPS29-202ENST00000447578 RNF34Q969K3 372 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 KLHL25Q9H0H3 589 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 WHRNQ9P202 907 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 GULP1Q9UBP9 304 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 DUSP10Q9Y6W6 482 aa6.22□□□□□ -1.41
VPS29-202ENST00000447578 SH3D21A4FU49 640 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 EPHX1P07099 455 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 HMGB1P09429 215 aaKnown RBP6.21□□□□□ -1.42
VPS29-202ENST00000447578 ZFYVE27Q5T4F4 411 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 HEATR6Q6AI08 1181 aaKnown RBP6.21□□□□□ -1.42
VPS29-202ENST00000447578 B3GNT8Q7Z7M8 397 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 LZTR1Q8N653 840 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 UBXN4Q92575 508 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 CRBNQ96SW2 442 aa6.21□□□□□ -1.42
VPS29-202ENST00000447578 METTL5Q9NRN9 209 aaKnown RBP6.21□□□□□ -1.42
VPS29-202ENST00000447578 SEPHS1P49903 392 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 PAK2Q13177 524 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 SPATS1Q496A3 300 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 CARFQ8N187 725 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 SMARCC2Q8TAQ2 1214 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 MTA3Q9BTC8 594 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 EFR3BQ9Y2G0 817 aa6.2□□□□□ -1.42
VPS29-202ENST00000447578 A0A1W2PQH9 124 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 C2orf71A6NGG8 1288 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 NOBOXO60393 691 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 INSRRP14616 1297 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 SLC7A5Q01650 507 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 HHIPL2Q6UWX4 724 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 CABP7Q86V35 215 aa6.19□□□□□ -1.42
VPS29-202ENST00000447578 METTL16Q86W50 562 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms