RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 TSPY3P0CV98 308 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 TSPY8P0CW00 308 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 SLC1A4P43007 532 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 PURAQ00577 322 aaKnown RBP19.84■□□□□ 0.77
CHMP3-203ENST00000409225 GRB10Q13322 594 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 DUSP28Q4G0W2 176 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 SPRED2Q7Z698 418 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 HERC6Q8IVU3 1022 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 PHOSPHO2Q8TCD6 241 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 PPP1R13LQ8WUF5 828 aa19.84■□□□□ 0.77
CHMP3-203ENST00000409225 KIF28PB7ZC32 967 aa19.83■□□□□ 0.77
CHMP3-203ENST00000409225 GPR37L1O60883 481 aa19.83■□□□□ 0.77
CHMP3-203ENST00000409225 MCCP23508 829 aa19.83■□□□□ 0.77
CHMP3-203ENST00000409225 RFC2P35250 354 aa19.83■□□□□ 0.77
CHMP3-203ENST00000409225 NEDD1Q8NHV4 660 aa19.83■□□□□ 0.77
CHMP3-203ENST00000409225 GPAA1O43292 621 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 NBPF20Q3BBV1 942 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 KCTD1Q719H9 257 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 RETREG2Q8NC44 543 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 APPBP2Q92624 585 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 GMCL1Q96IK5 515 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 MTG1Q9BT17 334 aaPredicted RBP19.82■□□□□ 0.76
CHMP3-203ENST00000409225 WDR11Q9BZH6 1224 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 GPHNQ9NQX3 736 aaPredicted RBP19.82■□□□□ 0.76
CHMP3-203ENST00000409225 PLIN4Q96Q06 1357 aa19.82■□□□□ 0.76
CHMP3-203ENST00000409225 LCTP09848 1927 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 SMARCA5O60264 1052 aaPredicted RBP19.81■□□□□ 0.76
CHMP3-203ENST00000409225 IQCF3P0C7M6 154 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 CPT1AP50416 773 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 TFAP4Q01664 338 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 OR6J1Q8NGC5 347 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 MORC4Q8TE76 937 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 CCPG1Q9ULG6 757 aa19.81■□□□□ 0.76
CHMP3-203ENST00000409225 M0R2C6 588 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 RNF113AO15541 343 aaKnown RBP19.8■□□□□ 0.76
CHMP3-203ENST00000409225 LPXNO60711 386 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 GNAT2P19087 354 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 RASGRP2Q7LDG7 609 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 KBTBD3Q8NAB2 608 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 GDPD5Q8WTR4 605 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 CD320Q9NPF0 282 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 PRR12Q9ULL5 1215 aa19.8■□□□□ 0.76
CHMP3-203ENST00000409225 COL4A4P53420 1690 aaPredicted RBP19.8■□□□□ 0.76
CHMP3-203ENST00000409225 PITPNM1O00562 1244 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 KCNJ6P48051 423 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 PDE4BQ07343 736 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 ALYREFQ86V81 257 aaKnown RBP19.79■□□□□ 0.76
CHMP3-203ENST00000409225 IFNL3Q8IZI9 196 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 LRRCC1Q9C099 1032 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 ZBTB40Q9NUA8 1239 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 MTMR7Q9Y216 660 aa19.79■□□□□ 0.76
CHMP3-203ENST00000409225 TANC1Q9C0D5 1861 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 LCHNA4D1U4 455 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 PI4K2BG5E9Z4 385 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 PLA2G6O60733 806 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 ALDH5A1P51649 535 aaPredicted RBP19.78■□□□□ 0.76
CHMP3-203ENST00000409225 BAATQ14032 418 aaPredicted RBP19.78■□□□□ 0.76
CHMP3-203ENST00000409225 RCSD1Q6JBY9 416 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 TMCO2Q7Z6W1 182 aaPredicted RBP19.78■□□□□ 0.76
CHMP3-203ENST00000409225 ECHDC1Q9NTX5 307 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 ADD3Q9UEY8 706 aaKnown RBP19.78■□□□□ 0.76
CHMP3-203ENST00000409225 STX8Q9UNK0 236 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 NOD1Q9Y239 953 aa19.78■□□□□ 0.76
CHMP3-203ENST00000409225 PATL2C9JE40 543 aaKnown RBP19.77■□□□□ 0.76
CHMP3-203ENST00000409225 BAIAP3O94812 1187 aa19.77■□□□□ 0.76
CHMP3-203ENST00000409225 CHMP4BP1P59074 171 aa19.77■□□□□ 0.76
CHMP3-203ENST00000409225 BFSP2Q13515 415 aa19.77■□□□□ 0.76
CHMP3-203ENST00000409225 BRDTQ58F21 947 aaPredicted RBP19.77■□□□□ 0.76
CHMP3-203ENST00000409225 NFRKBQ6P4R8 1299 aa19.77■□□□□ 0.76
CHMP3-203ENST00000409225 DDX19BQ9UMR2 479 aa19.77■□□□□ 0.76
CHMP3-203ENST00000409225 SCN10AQ9Y5Y9 1956 aa19.77■□□□□ 0.75
CHMP3-203ENST00000409225 TET1Q8NFU7 2136 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 MUC6Q6W4X9 2439 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 RBM47A0AV96 593 aaKnown RBP19.76■□□□□ 0.75
CHMP3-203ENST00000409225 PTPDC1A2A3K4 754 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 ICAM1P05362 532 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 SLC3A2P08195 630 aaKnown RBP19.76■□□□□ 0.75
CHMP3-203ENST00000409225 MS4A1P11836 297 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 HNRNPUQ00839 825 aaKnown RBP eCLIP19.76■□□□□ 0.75
CHMP3-203ENST00000409225 CCDC96Q2M329 555 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 TSHZ3Q63HK5 1081 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 ZBED2Q9BTP6 218 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 NACAP1Q9BZK3 213 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 MTUS1Q9ULD2 1270 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 RAD50Q92878 1312 aa19.76■□□□□ 0.75
CHMP3-203ENST00000409225 PTPRSQ13332 1948 aa19.75■□□□□ 0.75
CHMP3-203ENST00000409225 NFIBO00712 420 aa19.75■□□□□ 0.75
CHMP3-203ENST00000409225 ZFYP08048 801 aaPredicted RBP19.75■□□□□ 0.75
CHMP3-203ENST00000409225 WDR5P61964 334 aaKnown RBP19.75■□□□□ 0.75
CHMP3-203ENST00000409225 PPARAQ07869 468 aa19.75■□□□□ 0.75
CHMP3-203ENST00000409225 PPP2R5BQ15173 497 aa19.75■□□□□ 0.75
CHMP3-203ENST00000409225 COPS5Q92905 334 aa19.75■□□□□ 0.75
CHMP3-203ENST00000409225 UBE2ZQ9H832 354 aaPredicted RBP19.75■□□□□ 0.75
CHMP3-203ENST00000409225 BRWD1Q9NSI6 2320 aa19.74■□□□□ 0.75
CHMP3-203ENST00000409225 NMT2O60551 498 aa19.74■□□□□ 0.75
CHMP3-203ENST00000409225 CALML3P27482 149 aa19.74■□□□□ 0.75
CHMP3-203ENST00000409225 DEFB103AP81534 67 aa19.74■□□□□ 0.75
CHMP3-203ENST00000409225 PTPN11Q06124 597 aaPredicted RBP19.74■□□□□ 0.75
CHMP3-203ENST00000409225 PPP4R3BQ5MIZ7 849 aa19.74■□□□□ 0.75
CHMP3-203ENST00000409225 SLC30A10Q6XR72 485 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms