RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 GAS7O60861 476 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 NR5A1Q13285 461 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 NBNO60934 754 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 FSCBQ5H9T9 825 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 SZRD1Q7Z422 152 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 PCGF5Q86SE9 256 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 DEPDC1BQ8WUY9 529 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 SLC1A4P43007 532 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 PSMD7P51665 324 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 WASHC5Q12768 1159 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 CRLF3Q8IUI8 442 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 ESRRAP11474 423 aaPredicted RBP15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 FAM96AQ9H5X1 160 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 NFE2L3Q9Y4A8 694 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 KRT75O95678 551 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 SOX5P35711 763 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 ALS2CLQ60I27 953 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 OLFM3Q96PB7 478 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 TAB2Q9NYJ8 693 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 MPP6Q9NZW5 540 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 PTPN22Q9Y2R2 807 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 METTL14Q9HCE5 456 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 ATP2B4P23634 1241 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 IFRD2Q12894 506 aaPredicted RBP15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 CFAP65Q6ZU64 1925 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 RASSF10A6NK89 507 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 FAM133BQ5BKY9 247 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 HDDC2Q7Z4H3 204 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 TAGAPQ8N103 731 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 GLG1Q92896 1179 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 GCNAQ96QF7 691 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 CCT5P48643 541 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 ZC3H18Q86VM9 953 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 TEKT4Q8WW24 435 aa15.09■□□□□ 0.01
CCDC88A-201ENST00000263630 TOM1L1O75674 476 aa15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 ECM2O94769 699 aaPredicted RBP15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 DDIT3P35638 169 aa15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 TCIRG1Q13488 830 aa15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 MMTAG2Q9BU76 263 aaKnown RBP15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 ZNF229Q9UJW7 825 aa15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 STAT2P52630 851 aa15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 BZW1Q7L1Q6 419 aaKnown RBP15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 AFAP1Q8N556 730 aa15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 RTCBQ9Y3I0 505 aaKnown RBP15.08■□□□□ 0.01
CCDC88A-201ENST00000263630 UBXN8O00124 270 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 RPS6KB1P23443 525 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 SPOPLQ6IQ16 392 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 RFX6Q8HWS3 928 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 DISC1Q9NRI5 854 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 FANCD2Q9BXW9 1451 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 SH3GL3Q99963 347 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 ZBTB12Q9Y330 459 aaPredicted RBP15.08■□□□□ 0
CCDC88A-201ENST00000263630 C4BPBP20851 252 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 REXO1Q8N1G1 1221 aaKnown RBP15.08■□□□□ 0
CCDC88A-201ENST00000263630 CDC26Q8NHZ8 85 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 EFCAB5A4FU69 1503 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 IQANK1A0A1B0GTG1 560 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 TMEM191BP0C7N4 346 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 PTK2Q05397 1052 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 FAM102BQ5T8I3 360 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 EXOC8Q8IYI6 725 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 DNAJC17Q9NVM6 304 aaKnown RBP15.08■□□□□ 0
CCDC88A-201ENST00000263630 CHPF2Q9P2E5 772 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 C1orf228Q6PIY5 440 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 KDM4CQ9H3R0 1056 aa15.08■□□□□ 0
CCDC88A-201ENST00000263630 SOS2Q07890 1332 aaPredicted RBP15.08■□□□□ 0
CCDC88A-201ENST00000263630 KCNJ18B7U540 433 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 RAB14P61106 215 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 KCNJ12Q14500 433 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 RSRC2Q7L4I2 434 aaKnown RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 SELENONQ9NZV5 590 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 AARSP49588 968 aaKnown RBP eCLIP15.07■□□□□ 0
CCDC88A-201ENST00000263630 WDR47O94967 919 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 MECOMQ03112 1051 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 CABP7Q86V35 215 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 METTL23Q86XA0 190 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 ABI1Q8IZP0 508 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 MYOCDQ8IZQ8 938 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 KIF22Q14807 665 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 ARHGAP18Q8N392 663 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 ZFYVE19Q96K21 471 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 EDEM3Q9BZQ6 932 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 AK9Q5TCS8 1911 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 C11orf95C9JLR9 678 aaPredicted RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 LONRF3Q496Y0 759 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 CEP55Q53EZ4 464 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 ARHGEF16Q5VV41 709 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 NBPF10Q6P3W6 841 aaKnown RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 TPH2Q8IWU9 490 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 ARMCX3Q9UH62 379 aaPredicted RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 NSFL1CQ9UNZ2 370 aaKnown RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 RXRAP19793 462 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 GUCY2CP25092 1073 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 SLC9A5Q14940 896 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 SCG3Q8WXD2 468 aaKnown RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 MTRQ99707 1265 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 SETD1BQ9UPS6 1966 aaKnown RBP15.07■□□□□ 0
CCDC88A-201ENST00000263630 CYP2J2P51589 502 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 MAML1Q92585 1016 aa15.07■□□□□ 0
CCDC88A-201ENST00000263630 MYO1FO00160 1098 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms