RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SEMA6BQ9H3T3 888 aa22.38■■□□□ 1.17
CDX1-202ENST00000616154 CDH23Q9H251 3354 aa22.38■■□□□ 1.17
CDX1-202ENST00000616154 A0A0D9SFI3 127 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 A0A0U1RQG5 324 aaPredicted RBP22.37■■□□□ 1.17
CDX1-202ENST00000616154 ASB14A6NK59 587 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 TIMP1P01033 207 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 GNASQ5JWF2 1037 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 CCDC174Q6PII3 467 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 RASGRP2Q7LDG7 609 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 DCAF4Q8WV16 495 aa22.37■■□□□ 1.17
CDX1-202ENST00000616154 CDX2Q99626 313 aaPredicted RBP22.37■■□□□ 1.17
CDX1-202ENST00000616154 MCMDC2Q4G0Z9 681 aa22.36■■□□□ 1.17
CDX1-202ENST00000616154 FAM227BQ96M60 508 aa22.36■■□□□ 1.17
CDX1-202ENST00000616154 TTYH1Q9H313 450 aaPredicted RBP22.36■■□□□ 1.17
CDX1-202ENST00000616154 ASTN1O14525 1302 aa22.36■■□□□ 1.17
CDX1-202ENST00000616154 ZMYM6O95789 1325 aa22.36■■□□□ 1.17
CDX1-202ENST00000616154 TMEM265A0A087WTH1 108 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.35■■□□□ 1.17
CDX1-202ENST00000616154 ARVCFO00192 962 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 SNAP25P60880 206 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 TNFAIP2Q03169 654 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 CCDC96Q2M329 555 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 MUM1L1Q5H9M0 696 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 CYP39A1Q9NYL5 469 aa22.35■■□□□ 1.17
CDX1-202ENST00000616154 GNEQ9Y223 722 aaKnown RBP22.35■■□□□ 1.17
CDX1-202ENST00000616154 FGAP02671 866 aa22.34■■□□□ 1.17
CDX1-202ENST00000616154 ICAM1P05362 532 aa22.34■■□□□ 1.17
CDX1-202ENST00000616154 MFSD5Q6N075 450 aa22.34■■□□□ 1.17
CDX1-202ENST00000616154 VTI1AQ96AJ9 217 aa22.34■■□□□ 1.17
CDX1-202ENST00000616154 RANBP17Q9H2T7 1088 aaKnown RBP22.34■■□□□ 1.17
CDX1-202ENST00000616154 CCPG1Q9ULG6 757 aa22.34■■□□□ 1.17
CDX1-202ENST00000616154 MTMR7Q9Y216 660 aa22.34■■□□□ 1.17
CDX1-202ENST00000616154 TOP1P11387 765 aaKnown RBP22.33■■□□□ 1.17
CDX1-202ENST00000616154 NMIQ13287 307 aaPredicted RBP22.33■■□□□ 1.17
CDX1-202ENST00000616154 BTNL9Q6UXG8 535 aa22.33■■□□□ 1.17
CDX1-202ENST00000616154 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.33■■□□□ 1.17
CDX1-202ENST00000616154 FAM126BQ8IXS8 530 aa22.33■■□□□ 1.17
CDX1-202ENST00000616154 TCP11L1Q9NUJ3 509 aa22.33■■□□□ 1.17
CDX1-202ENST00000616154 EYSQ5T1H1 3165 aa22.33■■□□□ 1.17
CDX1-202ENST00000616154 TRIM6-TRIM34B2RNG4 842 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 TLR3O15455 904 aaKnown RBP22.32■■□□□ 1.16
CDX1-202ENST00000616154 HSPD1P10809 573 aaKnown RBP22.32■■□□□ 1.16
CDX1-202ENST00000616154 SDSP20132 328 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 BEX3Q00994 111 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 NOL8Q76FK4 1167 aaKnown RBP22.32■■□□□ 1.16
CDX1-202ENST00000616154 TLK2Q86UE8 772 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 ZNF589Q86UQ0 364 aaPredicted RBP22.32■■□□□ 1.16
CDX1-202ENST00000616154 TMEM47Q9BQJ4 181 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 TOMM22Q9NS69 142 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 CCDC171Q6TFL3 1326 aa22.32■■□□□ 1.16
CDX1-202ENST00000616154 SMPD1P17405 629 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 PDE4AP27815 886 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 PPIGQ13427 754 aaKnown RBP eCLIP22.31■■□□□ 1.16
CDX1-202ENST00000616154 RRP12Q5JTH9 1297 aaKnown RBP22.31■■□□□ 1.16
CDX1-202ENST00000616154 TTBK2Q6IQ55 1244 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 TAPT1Q6NXT6 567 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 NSMFQ6X4W1 530 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 SLC43A3Q8NBI5 491 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 MORC4Q8TE76 937 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 VTA1Q9NP79 307 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 PPP4R2Q9NY27 417 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 DDX49Q9Y6V7 483 aaKnown RBP22.31■■□□□ 1.16
CDX1-202ENST00000616154 LAMA4Q16363 1823 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.31■■□□□ 1.16
CDX1-202ENST00000616154 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.31■■□□□ 1.16
CDX1-202ENST00000616154 CABYRO75952 493 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 CD4P01730 458 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 FSCN1Q16658 493 aaKnown RBP22.31■■□□□ 1.16
CDX1-202ENST00000616154 SYDE2Q5VT97 1194 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 IQSEC1Q6DN90 963 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 CXCL17Q6UXB2 119 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 FBXO16Q8IX29 292 aaPredicted RBP22.31■■□□□ 1.16
CDX1-202ENST00000616154 MYLIPQ8WY64 445 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 RILPL2Q969X0 211 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.31■■□□□ 1.16
CDX1-202ENST00000616154 AP5M1Q9H0R1 490 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 Q9Y3F1 56 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 GTF3C3Q9Y5Q9 886 aa22.31■■□□□ 1.16
CDX1-202ENST00000616154 PCP11498 1178 aaKnown RBP22.3■■□□□ 1.16
CDX1-202ENST00000616154 SLC16A2P36021 539 aa22.3■■□□□ 1.16
CDX1-202ENST00000616154 TMEM199Q8N511 208 aa22.3■■□□□ 1.16
CDX1-202ENST00000616154 MAFAQ8NHW3 353 aaPredicted RBP22.3■■□□□ 1.16
CDX1-202ENST00000616154 PDGFCQ9NRA1 345 aa22.3■■□□□ 1.16
CDX1-202ENST00000616154 FRMPD2Q68DX3 1309 aaPredicted RBP22.29■■□□□ 1.16
CDX1-202ENST00000616154 LOC102724159A0A0B4J2E5 919 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 HIP1O00291 1037 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 ZEB2O60315 1214 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 PWP2Q15269 919 aaKnown RBP22.29■■□□□ 1.16
CDX1-202ENST00000616154 TMEM240Q5SV17 173 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 C16orf59Q7L2K0 433 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 EEPD1Q7L9B9 569 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 PURBQ96QR8 312 aaKnown RBP22.29■■□□□ 1.16
CDX1-202ENST00000616154 SEZ6LQ9BYH1 1024 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 PPP1R12CQ9BZL4 782 aa22.29■■□□□ 1.16
CDX1-202ENST00000616154 ADD3Q9UEY8 706 aaKnown RBP22.29■■□□□ 1.16
CDX1-202ENST00000616154 DYNC1LI2O43237 492 aaPredicted RBP22.28■■□□□ 1.16
CDX1-202ENST00000616154 PDHBP11177 359 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 CSF2RAP15509 400 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 PTGS1P23219 599 aa22.28■■□□□ 1.16
CDX1-202ENST00000616154 DNAJB2P25686 324 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 119.3 ms