RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 BRF1Q92994 677 aa29.91■■■□□ 2.38
TRIM28-204ENST00000594806 BRPF3Q9ULD4 1205 aa29.91■■■□□ 2.38
TRIM28-204ENST00000594806 HTTP42858 3142 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 IGHA2P01877 340 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 PGK2P07205 417 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 CAPN2P17655 700 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 CCL14Q16627 93 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 MUM1L1Q5H9M0 696 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 MAP3K21Q5TCX8 1036 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 ZNF467Q7Z7K2 595 aaPredicted RBP29.9■■■□□ 2.38
TRIM28-204ENST00000594806 RGS22Q8NE09 1264 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 MAML3Q96JK9 1138 aa29.9■■■□□ 2.38
TRIM28-204ENST00000594806 A1CFQ9NQ94 594 aaKnown RBP29.9■■■□□ 2.38
TRIM28-204ENST00000594806 PNMA6FA0A0J9YX94 578 aa29.89■■■□□ 2.38
TRIM28-204ENST00000594806 CYTH3O43739 400 aa29.89■■■□□ 2.38
TRIM28-204ENST00000594806 EVCP57679 992 aa29.89■■■□□ 2.38
TRIM28-204ENST00000594806 MRPL11Q9Y3B7 192 aaKnown RBP29.89■■■□□ 2.38
TRIM28-204ENST00000594806 KIAA0100Q14667 2235 aaKnown RBP29.89■■■□□ 2.38
TRIM28-204ENST00000594806 RPTORQ8N122 1335 aa29.89■■■□□ 2.38
TRIM28-204ENST00000594806 CCDC196A0A1B0GTZ2 297 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 CCL5P13501 91 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 RXRAP19793 462 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 RTN1Q16799 776 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 TMTC3Q6ZXV5 915 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 CLEC4DQ8WXI8 215 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 RRP36Q96EU6 259 aaKnown RBP29.88■■■□□ 2.37
TRIM28-204ENST00000594806 FLRT1Q9NZU1 646 aa29.88■■■□□ 2.37
TRIM28-204ENST00000594806 RBBP6Q7Z6E9 1792 aaKnown RBP29.87■■■□□ 2.37
TRIM28-204ENST00000594806 POTEB2H3BUK9 544 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 APOBRQ0VD83 1088 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 SLC35G1Q2M3R5 365 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 USH1GQ495M9 461 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 MCF2L2Q86YR7 1114 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 CCDC144CPQ8IYA2 1237 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 PIGSQ96S52 555 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 UPF3BQ9BZI7 483 aaKnown RBP29.87■■■□□ 2.37
TRIM28-204ENST00000594806 RNF208Q9H0X6 261 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 ALDH8A1Q9H2A2 487 aaPredicted RBP29.87■■■□□ 2.37
TRIM28-204ENST00000594806 HMX1Q9NP08 348 aaPredicted RBP29.87■■■□□ 2.37
TRIM28-204ENST00000594806 PDRG1Q9NUG6 133 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 CYP39A1Q9NYL5 469 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 NRBP1Q9UHY1 535 aa29.87■■■□□ 2.37
TRIM28-204ENST00000594806 GOLGA8AA7E2F4 631 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 GOLGA8BA8MQT2 603 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 PRKAR2AP13861 404 aaKnown RBP29.86■■■□□ 2.37
TRIM28-204ENST00000594806 MTFR1Q15390 333 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 NSMFQ6X4W1 530 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 HOMER1Q86YM7 354 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 SRBD1Q8N5C6 995 aaKnown RBP29.86■■■□□ 2.37
TRIM28-204ENST00000594806 SAMD3Q8N6K7 520 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 FAM133AQ8N9E0 248 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 SEC63Q9UGP8 760 aaKnown RBP29.86■■■□□ 2.37
TRIM28-204ENST00000594806 NID2Q14112 1375 aa29.86■■■□□ 2.37
TRIM28-204ENST00000594806 PLEKHA8P1O95397 391 aa29.85■■■□□ 2.37
TRIM28-204ENST00000594806 METAP2P50579 478 aaKnown RBP eCLIP29.85■■■□□ 2.377e-10■■■□□ 18.4
TRIM28-204ENST00000594806 CACNB2Q08289 660 aaPredicted RBP29.85■■■□□ 2.37
TRIM28-204ENST00000594806 IFFO2Q5TF58 517 aa29.85■■■□□ 2.37
TRIM28-204ENST00000594806 MAMDC4Q6UXC1 1216 aa29.85■■■□□ 2.37
TRIM28-204ENST00000594806 TINF2Q9BSI4 451 aa29.85■■■□□ 2.37
TRIM28-204ENST00000594806 UNC93B1Q9H1C4 597 aa29.85■■■□□ 2.37
TRIM28-204ENST00000594806 NAP1L2Q9ULW6 460 aaPredicted RBP29.85■■■□□ 2.37
TRIM28-204ENST00000594806 LOC102724159A0A0B4J2E5 919 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 NFIBO00712 420 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 GJB1P08034 283 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 TOB2Q14106 344 aaPredicted RBP29.84■■■□□ 2.37
TRIM28-204ENST00000594806 PWP2Q15269 919 aaKnown RBP29.84■■■□□ 2.37
TRIM28-204ENST00000594806 RNF207Q6ZRF8 634 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 RAB11FIP4Q86YS3 637 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 PAK6Q9NQU5 681 aaPredicted RBP29.84■■■□□ 2.37
TRIM28-204ENST00000594806 MAP3K20Q9NYL2 800 aaKnown RBP29.84■■■□□ 2.37
TRIM28-204ENST00000594806 PCDHA1Q9Y5I3 950 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 SYNGAP1Q96PV0 1343 aa29.84■■■□□ 2.37
TRIM28-204ENST00000594806 TRIM32Q13049 653 aa29.83■■■□□ 2.37
TRIM28-204ENST00000594806 BAATQ14032 418 aaPredicted RBP29.83■■■□□ 2.37
TRIM28-204ENST00000594806 ZNF274Q96GC6 653 aaPredicted RBP29.83■■■□□ 2.37
TRIM28-204ENST00000594806 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.83■■■□□ 2.378e-10■□□□□ 9
TRIM28-204ENST00000594806 UPF2Q9HAU5 1272 aaKnown RBP29.83■■■□□ 2.37
TRIM28-204ENST00000594806 ADD3Q9UEY8 706 aaKnown RBP29.83■■■□□ 2.37
TRIM28-204ENST00000594806 PTPDC1A2A3K4 754 aa29.82■■■□□ 2.36
TRIM28-204ENST00000594806 MYCP01106 439 aaPredicted RBP29.82■■■□□ 2.36
TRIM28-204ENST00000594806 TAL1P17542 331 aaPredicted RBP29.82■■■□□ 2.36
TRIM28-204ENST00000594806 CYP2C19P33261 490 aa29.82■■■□□ 2.36
TRIM28-204ENST00000594806 ANKRD1Q15327 319 aa29.82■■■□□ 2.36
TRIM28-204ENST00000594806 ASB14A6NK59 587 aa29.81■■■□□ 2.36
TRIM28-204ENST00000594806 PPP1R11O60927 126 aaPredicted RBP29.81■■■□□ 2.36
TRIM28-204ENST00000594806 FAM217BQ9NTX9 383 aaPredicted RBP29.81■■■□□ 2.36
TRIM28-204ENST00000594806 CYBAP13498 195 aa29.8■■■□□ 2.36
TRIM28-204ENST00000594806 PDIA3P30101 505 aaKnown RBP29.8■■■□□ 2.36
TRIM28-204ENST00000594806 RPS6P62753 249 aaKnown RBP29.8■■■□□ 2.36
TRIM28-204ENST00000594806 CNTN2Q02246 1040 aa29.8■■■□□ 2.36
TRIM28-204ENST00000594806 GHRHRQ02643 423 aa29.8■■■□□ 2.36
TRIM28-204ENST00000594806 FGD4Q96M96 766 aa29.8■■■□□ 2.36
TRIM28-204ENST00000594806 C22orf23Q9BZE7 217 aa29.8■■■□□ 2.36
TRIM28-204ENST00000594806 MSCO60682 206 aa29.79■■■□□ 2.36
TRIM28-204ENST00000594806 GJA8P48165 433 aa29.79■■■□□ 2.36
TRIM28-204ENST00000594806 RBM25P49756 843 aaKnown RBP29.79■■■□□ 2.36
TRIM28-204ENST00000594806 CMTR1Q8N1G2 835 aaKnown RBP29.79■■■□□ 2.36
TRIM28-204ENST00000594806 DNERQ8NFT8 737 aa29.79■■■□□ 2.36
TRIM28-204ENST00000594806 CNPY2Q9Y2B0 182 aa29.79■■■□□ 2.36
TRIM28-204ENST00000594806 SOWAHBA6NEL2 793 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms