RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SLC25A27O95847 323 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 SNAI1O95863 264 aaPredicted RBP10.76□□□□□ -0.69
VPS35-206ENST00000565228 XRCC5P13010 732 aaKnown RBP10.76□□□□□ -0.69
VPS35-206ENST00000565228 ALAS1P13196 640 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 EN2P19622 333 aaPredicted RBP10.76□□□□□ -0.69
VPS35-206ENST00000565228 HOXD10P28358 340 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 MNX1P50219 401 aaPredicted RBP10.76□□□□□ -0.69
VPS35-206ENST00000565228 CCNA1P78396 465 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 CACNB2Q08289 660 aaPredicted RBP10.76□□□□□ -0.69
VPS35-206ENST00000565228 SLC9C1Q4G0N8 1177 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 TMEM63BQ5T3F8 832 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 SLC30A10Q6XR72 485 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 FAM133AQ8N9E0 248 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 PXYLP1Q8TE99 480 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 MAML3Q96JK9 1138 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 TRERF1Q96PN7 1200 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 APBA2Q99767 749 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 KATNBL1Q9H079 304 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 CCPG1Q9ULG6 757 aa10.76□□□□□ -0.69
VPS35-206ENST00000565228 ADCY6O43306 1168 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 PPFIA3O75145 1194 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 DDAH1O94760 285 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 LARGE1O95461 756 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 CCL5P13501 91 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 ZKSCAN1P17029 563 aaPredicted RBP10.75□□□□□ -0.69
VPS35-206ENST00000565228 RGS2P41220 211 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 ST3GAL1Q11201 340 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 USH1GQ495M9 461 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 TYW1BQ6NUM6 668 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 RUFY3Q7L099 469 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 ABRAQ8N0Z2 381 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 FBXL16Q8N461 479 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 SLAIN1Q8ND83 568 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 SOCS4Q8WXH5 440 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 PIBF1Q8WXW3 757 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 BRF1Q92994 677 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 CYP39A1Q9NYL5 469 aa10.75□□□□□ -0.69
VPS35-206ENST00000565228 KLF18A0A0U1RQI7 1052 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 ERICH2A1L162 156 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 STRNO43815 780 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 HMGCRP04035 888 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 FCER1AP12319 257 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 CYBAP13498 195 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 PRKAR2AP13861 404 aaKnown RBP10.74□□□□□ -0.69
VPS35-206ENST00000565228 ADD1P35611 737 aaKnown RBP10.74□□□□□ -0.69
VPS35-206ENST00000565228 EVCP57679 992 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 IRX5P78411 483 aaPredicted RBP10.74□□□□□ -0.69
VPS35-206ENST00000565228 BAATQ14032 418 aaPredicted RBP10.74□□□□□ -0.69
VPS35-206ENST00000565228 KRT32Q14532 448 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 LHX8Q68G74 356 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 BLOC1S2Q6QNY1 142 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 NFXL1Q6ZNB6 911 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 TMTC3Q6ZXV5 915 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 CATIPQ7Z7H3 387 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 MICU3Q86XE3 530 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 CCDC82Q8N4S0 544 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 FANCBQ8NB91 859 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 CHST13Q8NET6 341 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 LENG1Q96BZ8 264 aaPredicted RBP10.74□□□□□ -0.69
VPS35-206ENST00000565228 TM6SF1Q9BZW5 370 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 ACAD9Q9H845 621 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 PAK6Q9NQU5 681 aaPredicted RBP10.74□□□□□ -0.69
VPS35-206ENST00000565228 CNTNAP5Q8WYK1 1306 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 NID2Q14112 1375 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 ALPK3Q96L96 1907 aa10.74□□□□□ -0.69
VPS35-206ENST00000565228 CCDC69A6NI79 296 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 ZBTB5O15062 677 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 ZNF865P0CJ78 1059 aaPredicted RBP10.73□□□□□ -0.69
VPS35-206ENST00000565228 FDX1P10109 184 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 PDIA3P30101 505 aaKnown RBP10.73□□□□□ -0.69
VPS35-206ENST00000565228 ARHGEF6Q15052 776 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 NTRK3Q16288 839 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 OLFML2BQ68BL8 750 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 HOMER1Q86YM7 354 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 MAP3K14Q99558 947 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 NCOA5Q9HCD5 579 aaKnown RBP10.73□□□□□ -0.69
VPS35-206ENST00000565228 SLC12A7Q9Y666 1083 aa10.73□□□□□ -0.69
VPS35-206ENST00000565228 RPS6P62753 249 aaKnown RBP10.72□□□□□ -0.69
VPS35-206ENST00000565228 SART3Q15020 963 aaKnown RBP10.72□□□□□ -0.69
VPS35-206ENST00000565228 ANO1Q5XXA6 986 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 NSMFQ6X4W1 530 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 UBE2Q1Q7Z7E8 422 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 DPP9Q86TI2 863 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 CCAR1Q8IX12 1150 aaKnown RBP10.72□□□□□ -0.69
VPS35-206ENST00000565228 DIS3LQ8TF46 1054 aaKnown RBP10.72□□□□□ -0.69
VPS35-206ENST00000565228 SPZ1Q9BXG8 430 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.72□□□□□ -0.69
VPS35-206ENST00000565228 RNF208Q9H0X6 261 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 TPCN1Q9ULQ1 816 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 IVNS1ABPQ9Y6Y0 642 aa10.72□□□□□ -0.69
VPS35-206ENST00000565228 RANBP2P49792 3224 aaKnown RBP10.72□□□□□ -0.69
VPS35-206ENST00000565228 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 RBAK-RBAKDNI3L0D1 243 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 ZBTB43O43298 467 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 CD2BP2O95400 341 aaKnown RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 CTDNEP1O95476 244 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 HMGB1P09429 215 aaKnown RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 AK2P54819 239 aa10.71□□□□□ -0.69
VPS35-206ENST00000565228 CCT2P78371 535 aaKnown RBP10.71□□□□□ -0.69
VPS35-206ENST00000565228 GHRHRQ02643 423 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms