RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 HPCAL4Q9UM19 191 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 PA2G4Q9UQ80 394 aaKnown RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 ROBO3Q96MS0 1386 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CMA1P23946 247 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 SLC8A1P32418 973 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 NF2P35240 595 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 UBASH3AP57075 661 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 SCRN1Q12765 414 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CCDC102BQ68D86 513 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 RASGRP2Q7LDG7 609 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 TRIML1Q8N9V2 468 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 FSIP1Q8NA03 581 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 KLHDC4Q8TBB5 520 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 ZNF384Q8TF68 577 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 COG1Q8WTW3 980 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 BRF1Q92994 677 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 WDR24Q96S15 920 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 HAUS7Q99871 368 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 ECHDC1Q9NTX5 307 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 WWC3Q9ULE0 1092 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 DENND2AQ9ULE3 1009 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 G3BP2Q9UN86 482 aaKnown RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 MAST3O60307 1309 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 TCRBV5S4A2TA0A5A2 114 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 H3BQV1 296 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 MEFVO15553 781 aaPredicted RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 PPIP5K2O43314 1243 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 RASSF9O75901 435 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 SLC3A2P08195 630 aaKnown RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 IFIT1P09914 478 aaKnown RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 ADCY2Q08462 1091 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 FSTL1Q12841 308 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 NNTQ13423 1086 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 GPR162Q16538 588 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 PTPROQ16827 1216 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 METTL24Q5JXM2 366 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 IFFO2Q5TF58 517 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 ZNF572Q7Z3I7 529 aaPredicted RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 ZDHHC15Q96MV8 337 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 ANKRD27Q96NW4 1050 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 SH3GL3Q99963 347 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 MOV10L1Q9BXT6 1211 aaKnown RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 CNNM1Q9NRU3 951 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CEP126Q9P2H0 1117 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 PPP2R3BQ9Y5P8 575 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 RLFQ13129 1914 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 ZNF236Q9UL36 1845 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 RBBP6Q7Z6E9 1792 aaKnown RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 CTAGE9A4FU28 777 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 OPA1O60313 960 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 HIBADHP31937 336 aaKnown RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 IRAK1P51617 712 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 SARNPP82979 210 aaKnown RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 CKAP4Q07065 602 aaKnown RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 E2F4Q16254 413 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 SPECC1LQ69YQ0 1117 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 ARHGAP27Q6ZUM4 889 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 TC2NQ8N9U0 490 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 CCDC148Q8NFR7 591 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 ZKSCAN4Q969J2 545 aaPredicted RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 PNKPQ96T60 521 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 VCPKMTQ9H867 229 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 RNF181Q9P0P0 153 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 GRIN2DO15399 1336 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 PSMD14O00487 310 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 PPFIA3O75145 1194 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 USP14P54578 494 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 AMPD2Q01433 879 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 PTH1RQ03431 593 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 RASGRF1Q13972 1273 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 DPCR1Q3MIW9 517 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 ALS2CLQ60I27 953 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 CIAPIN1Q6FI81 312 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 IQCEQ6IPM2 695 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 KIAA1328Q86T90 577 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 WDR66Q8TBY9 1149 aa5.88□□□□□ -1.47
USP28-213ENST00000544967 CCDC12Q8WUD4 166 aaPredicted RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 NAPGQ99747 312 aaPredicted RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 TRIM6Q9C030 488 aaPredicted RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 TFIP11Q9UBB9 837 aaKnown RBP5.88□□□□□ -1.47
USP28-213ENST00000544967 IQCA1LA6NCM1 817 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 H0YHG0 523 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 PPP6R2O75170 966 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 KIAA0754O94854 1291 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ZNF18P17022 549 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 COPB2P35606 906 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 MCAMP43121 646 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 TLDC1Q6P9B6 456 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ARMC9Q7Z3E5 817 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 LINC00301Q8NCQ3 95 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ENOX1Q8TC92 643 aaKnown RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 CCDC102AQ96A19 550 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 HOOK2Q96ED9 719 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ZNF274Q96GC6 653 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 HHIPL1Q96JK4 782 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ADARB2Q9NS39 739 aaKnown RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 HPSEQ9Y251 543 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 U3KPZ7 1027 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 CNTNAP1P78357 1384 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms