RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 MARCKSP29966 332 aaPredicted RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 INPP5BP32019 993 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 MCM7P33993 719 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 FKBP1BP68106 108 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 JAG1P78504 1218 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 ATP2C1P98194 919 aaPredicted RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 PPATQ06203 517 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 PTGDRQ13258 359 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 MTMR2Q13614 643 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 COG2Q14746 738 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 ZNF174Q15697 407 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 ZYXQ15942 572 aaKnown RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 TPRNQ4KMQ1 711 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 PPP4R3AQ6IN85 833 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 MOXD1Q6UVY6 613 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 CDAN1Q8IWY9 1227 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 ZKSCAN4Q969J2 545 aaPredicted RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 NAT10Q9H0A0 1025 aaKnown RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 CPVLQ9H3G5 476 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 TSPY26PQ9H489 355 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 CLSTN2Q9H4D0 955 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 TMEM63CQ9P1W3 806 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 CCDC39Q9UFE4 941 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 KCNH3Q9ULD8 1083 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 FAM237AA0A1B0GTK4 181 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L15C9J2P7 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L13C9JLJ4 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L11C9JVI0 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L18D6R9N7 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L22D6RA61 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L17D6RBQ6 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L19D6RCP7 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L20D6RJB6 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 GCOM1H8Y6P7 765 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 CXCL11O14625 94 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 SLC26A4O43511 780 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 NR1I2O75469 434 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP2O75604 605 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 ZNF202O95125 648 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 ICAM1P05362 532 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 POLR2MP0CAP2 368 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 SLURP2P0DP57 97 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 USP17L24Q0WX57 530 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 INF2Q27J81 1249 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 SLC35G1Q2M3R5 365 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 LETM2Q2VYF4 491 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 AXDND1Q5T1B0 1012 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 JAKMIP3Q5VZ66 844 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 RESP18Q5W5W9 173 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 TYW1BQ6NUM6 668 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 FASTKD5Q7L8L6 764 aaKnown RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 ERO1BQ86YB8 467 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 SLFN12Q8IYM2 578 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 CEP57L1Q8IYX8 460 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 IQUBQ8NA54 791 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 TBCKQ8TEA7 893 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 NUP88Q99567 741 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 FTOQ9C0B1 505 aaKnown RBP eCLIP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 RPAP3Q9H6T3 665 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 BIN2Q9UBW5 565 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-210ENST00000498259 CCPG1Q9ULG6 757 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 PPP1R9AQ9ULJ8 1098 aa9.59□□□□□ -0.87
SF3A1-210ENST00000498259 SCN4AP35499 1836 aa9.59□□□□□ -0.88
SF3A1-210ENST00000498259 GOLGB1Q14789 3259 aaKnown RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 A0A1B0GVL5 298 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 OR52Z1P0C646 297 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 PFKFB1P16118 471 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 LIG1P18858 919 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 VCAM1P19320 739 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 COPB2P35606 906 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 UBA7P41226 1012 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 CLK2P49760 499 aaKnown RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 PDIA5Q14554 519 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 SHROOM1Q2M3G4 852 aaPredicted RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 TKFCQ3LXA3 575 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 USH1GQ495M9 461 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 SH3D19Q5HYK7 790 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 FMR1NBQ8N0W7 255 aaPredicted RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 MB21D1Q8N884 522 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 PROCA1Q8NCQ7 364 aaPredicted RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 CNNM3Q8NE01 707 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 ENGASEQ8NFI3 743 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 RASSF8Q8NHQ8 419 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 CDCA5Q96FF9 252 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 GTPBP4Q9BZE4 634 aaKnown RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 CUEDC2Q9H467 287 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 SLC38A10Q9HBR0 1119 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 FBXO2Q9UK22 296 aaPredicted RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 SCAF8Q9UPN6 1271 aaKnown RBP9.58□□□□□ -0.88
SF3A1-210ENST00000498259 AFG3L2Q9Y4W6 797 aa9.58□□□□□ -0.88
SF3A1-210ENST00000498259 TCHHQ07283 1943 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 MYH15Q9Y2K3 1946 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 VWA3AA6NCI4 1184 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 ADM5C9JUS6 153 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 TBX3O15119 743 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 SMC2O95347 1197 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 MYL1P05976 194 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 ZNF76P36508 570 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 NDUFA8P51970 172 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 SEMA3FQ13275 785 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms