RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 ZDHHC9Q9Y397 364 aa22.27■■□□□ 1.16
USP39-218ENST00000493829 ABCB11O95342 1321 aa22.27■■□□□ 1.16
USP39-218ENST00000493829 KIF28PB7ZC32 967 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 ZSCAN22P10073 491 aaPredicted RBP22.26■■□□□ 1.15
USP39-218ENST00000493829 INHBEP58166 350 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 UBE2SQ16763 222 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 MUM1L1Q5H9M0 696 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 ANKRD13CQ8N6S4 541 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 MB21D1Q8N884 522 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 RASGRP4Q8TDF6 673 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 RBPJLQ9UBG7 517 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 CIZ1Q9ULV3 898 aaPredicted RBP22.26■■□□□ 1.15
USP39-218ENST00000493829 KRT2P35908 639 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 STAT3P40763 770 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 OAZ1P54368 228 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 C1QTNF8P60827 252 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 NR5A1Q13285 461 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 SAFBQ15424 915 aaKnown RBP eCLIP22.26■■□□□ 1.15
USP39-218ENST00000493829 NPY5RQ15761 445 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 FOXD4L6Q3SYB3 417 aaPredicted RBP22.26■■□□□ 1.15
USP39-218ENST00000493829 FOXD4L3Q6VB84 417 aaPredicted RBP22.26■■□□□ 1.15
USP39-218ENST00000493829 C6orf50Q9HD87 102 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 RNF146Q9NTX7 359 aa22.26■■□□□ 1.15
USP39-218ENST00000493829 BTBD18B2RXH4 712 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 NFIBO00712 420 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 OPLAHO14841 1288 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 BRD1O95696 1058 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 CALML3P27482 149 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 NUCB2P80303 420 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 TRERF1Q96PN7 1200 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 SPATC1LQ9H0A9 340 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 ZMYND12Q9H0C1 365 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 PSTPIP2Q9H939 334 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 BRMS1Q9HCU9 246 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 PCDHA4Q9UN74 947 aa22.25■■□□□ 1.15
USP39-218ENST00000493829 MRPL11Q9Y3B7 192 aaKnown RBP22.25■■□□□ 1.15
USP39-218ENST00000493829 TM4SF4P48230 202 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 TRAF1Q13077 416 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 BLIDQ8IZY5 108 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 CUL5Q93034 780 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 TMEM260Q9NX78 707 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 CPA4Q9UI42 421 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 RABGAP1Q9Y3P9 1069 aa22.24■■□□□ 1.15
USP39-218ENST00000493829 ESYT2A0FGR8 921 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 ATP2A1O14983 1001 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 ECM2O94769 699 aaPredicted RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 F13A1P00488 732 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 HSPA6P17066 643 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 HOXA13P31271 388 aaPredicted RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 ERVK-9P63128 1117 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 ERVK-24P63145 666 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 Q3C1V9 767 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 NOM1Q5C9Z4 860 aaKnown RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 NCAPG2Q86XI2 1143 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 CLEC4DQ8WXI8 215 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 PGBD1Q96JS3 809 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 MOV10L1Q9BXT6 1211 aaKnown RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 RIC8AQ9NPQ8 531 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 BIN2Q9UBW5 565 aaPredicted RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 THSD7BQ9C0I4 1608 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 CFBP00751 764 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 GNA11P29992 359 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 RESTQ13127 1097 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 CRHR2Q13324 411 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 WDR78Q5VTH9 848 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 USP17L6PQ6QN14 398 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 GTF3C2Q8WUA4 911 aaPredicted RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 TBC1D5Q92609 795 aa22.23■■□□□ 1.15
USP39-218ENST00000493829 ZCCHC17Q9NP64 241 aaKnown RBP22.23■■□□□ 1.15
USP39-218ENST00000493829 FAM205CA6NFA0 338 aa22.22■■□□□ 1.15
USP39-218ENST00000493829 GCLCP48506 637 aaPredicted RBP22.22■■□□□ 1.15
USP39-218ENST00000493829 JAKMIP3Q5VZ66 844 aa22.22■■□□□ 1.15
USP39-218ENST00000493829 FAM173BQ6P4H8 233 aa22.22■■□□□ 1.15
USP39-218ENST00000493829 NSMFQ6X4W1 530 aa22.22■■□□□ 1.15
USP39-218ENST00000493829 REXO1Q8N1G1 1221 aaKnown RBP22.22■■□□□ 1.15
USP39-218ENST00000493829 R3HDMLQ9H3Y0 253 aa22.22■■□□□ 1.15
USP39-218ENST00000493829 ADGRA2Q96PE1 1338 aa22.22■■□□□ 1.15
USP39-218ENST00000493829 RIOX2Q8IUF8 465 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 DAGLBQ8NCG7 672 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 GPRC5AQ8NFJ5 357 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 CHAMP1Q96JM3 812 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 ZFYVE28Q9HCC9 887 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 PNMA2Q9UL42 364 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 PCDHA6Q9UN73 950 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 PCDHA8Q9Y5H6 950 aa22.21■■□□□ 1.15
USP39-218ENST00000493829 ERCC3P19447 782 aa22.2■■□□□ 1.15
USP39-218ENST00000493829 MRPL12P52815 198 aaKnown RBP22.2■■□□□ 1.15
USP39-218ENST00000493829 EARS2Q5JPH6 523 aaKnown RBP22.2■■□□□ 1.15
USP39-218ENST00000493829 SLC30A10Q6XR72 485 aa22.2■■□□□ 1.15
USP39-218ENST00000493829 BICD2Q8TD16 824 aa22.2■■□□□ 1.15
USP39-218ENST00000493829 ACAD9Q9H845 621 aa22.2■■□□□ 1.15
USP39-218ENST00000493829 GALNT17Q6IS24 598 aa22.2■■□□□ 1.14
USP39-218ENST00000493829 PIK3AP1Q6ZUJ8 805 aa22.2■■□□□ 1.14
USP39-218ENST00000493829 FCHSD1Q86WN1 690 aa22.2■■□□□ 1.14
USP39-218ENST00000493829 NOSTRINQ8IVI9 506 aa22.2■■□□□ 1.14
USP39-218ENST00000493829 FAM177A1Q8N128 213 aaPredicted RBP22.2■■□□□ 1.14
USP39-218ENST00000493829 PORCNQ9H237 461 aa22.2■■□□□ 1.14
USP39-218ENST00000493829 FOXP1Q9H334 677 aaPredicted RBP22.2■■□□□ 1.14
USP39-218ENST00000493829 MYH15Q9Y2K3 1946 aa22.19■■□□□ 1.14
USP39-218ENST00000493829 GCOM1H8Y6P7 765 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms