RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SNX27Q96L92 541 aa6.84□□□□□ -1.31
PTPN4-210ENST00000485247 GSX2Q9BZM3 304 aa6.84□□□□□ -1.31
PTPN4-210ENST00000485247 PHAXQ9H814 394 aaKnown RBP6.84□□□□□ -1.31
PTPN4-210ENST00000485247 SERPINA10Q9UK55 444 aa6.84□□□□□ -1.31
PTPN4-210ENST00000485247 OGDHLQ9ULD0 1010 aa6.84□□□□□ -1.31
PTPN4-210ENST00000485247 MUC3AQ02505 3323 aa6.84□□□□□ -1.31
PTPN4-210ENST00000485247 M0R082 166 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ALAS2P22557 587 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 CRKP46108 304 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 SHHQ15465 462 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 MFSD14BQ5SR56 506 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 CAPN12Q6ZSI9 719 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ZNF804AQ7Z570 1209 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ALYREFQ86V81 257 aaKnown RBP6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ANKRD13CQ8N6S4 541 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ZNF417Q8TAU3 575 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 SMCR8Q8TEV9 937 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-210ENST00000485247 PPM1EQ8WY54 764 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 VTI1AQ96AJ9 217 aa6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ZNF587Q96SQ5 575 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-210ENST00000485247 UHRF1Q96T88 793 aaPredicted RBP6.83□□□□□ -1.32
PTPN4-210ENST00000485247 ARAP2Q8WZ64 1704 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 MSTNO14793 375 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 MICAL2O94851 1124 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 COL6A1P12109 1028 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 C11orf91Q3C1V1 193 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 COX20Q5RI15 118 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 C9orf50Q5SZB4 431 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 DCAF15Q66K64 600 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 C20orf204Q6ZNR8 217 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 MICALL1Q8N3F8 863 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 PBXIP1Q96AQ6 731 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 HOOK2Q96ED9 719 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 METTL22Q9BUU2 404 aaPredicted RBP6.82□□□□□ -1.32
PTPN4-210ENST00000485247 PLVAPQ9BX97 442 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 C1QTNF1Q9BXJ1 281 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 ZNF341Q9BYN7 854 aa6.82□□□□□ -1.32
PTPN4-210ENST00000485247 NOP53Q9NZM5 478 aaKnown RBP6.82□□□□□ -1.32
PTPN4-210ENST00000485247 PIK3R2O00459 728 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 CHL1O00533 1208 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 HOXB7P09629 217 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 NFKB1P19838 968 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 ARSDP51689 593 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 SMAD3P84022 425 aaKnown RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 CCINQ13939 588 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 SUZ12Q15022 739 aaKnown RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 GRIK5Q16478 980 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 FAM26DQ5JW98 314 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 DUSP27Q5VZP5 1158 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 GADL1Q6ZQY3 521 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 C15orf52Q6ZUT6 534 aaKnown RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 ATXN2LQ8WWM7 1075 aaKnown RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 CCDC97Q96F63 343 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 ASB2Q96Q27 587 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 SAP130Q9H0E3 1048 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 PNNQ9H307 717 aaKnown RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 TMOD2Q9NZR1 351 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 CXXC1Q9P0U4 656 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 PRKAG2Q9UGJ0 569 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 NAGPAQ9UK23 515 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 SLC6A14Q9UN76 642 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 USP20Q9Y2K6 914 aa6.81□□□□□ -1.32
PTPN4-210ENST00000485247 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.81□□□□□ -1.32
PTPN4-210ENST00000485247 LAMA2P24043 3122 aaKnown RBP6.8□□□□□ -1.32
PTPN4-210ENST00000485247 CXCL11O14625 94 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 OPLAHO14841 1288 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 PLIN1O60240 522 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 NID1P14543 1247 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 CHRNA4P43681 627 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 TBC1D8BQ0IIM8 1120 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 ERICH6Q7L0X2 663 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 FASTKD5Q7L8L6 764 aaKnown RBP6.8□□□□□ -1.32
PTPN4-210ENST00000485247 UBE3BQ7Z3V4 1068 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 FAM83AQ86UY5 434 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 DOCK3Q8IZD9 2030 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 TRIB2Q92519 343 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 NECAB3Q96P71 396 aaPredicted RBP6.8□□□□□ -1.32
PTPN4-210ENST00000485247 LRFN3Q9BTN0 628 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 MKNK1Q9BUB5 465 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 C1orf115Q9H7X2 142 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 ZFATQ9P243 1243 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 MAP3K2Q9Y2U5 619 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 ZHX2Q9Y6X8 837 aa6.8□□□□□ -1.32
PTPN4-210ENST00000485247 A0A0G2JLL6 359 aaPredicted RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 C1QTNF9BB2RNN3 333 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 IGKV5-2P06315 115 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 EPB42P16452 691 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 CYP2B6P20813 491 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 TMPOP42166 694 aaKnown RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 MRPS5P82675 430 aaKnown RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 LMOD3Q0VAK6 560 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 PDE3AQ14432 1141 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 CWF19L2Q2TBE0 894 aaKnown RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 KRT25Q7Z3Z0 450 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 PRRT2Q7Z6L0 340 aaPredicted RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 CD163Q86VB7 1156 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 TREML1Q86YW5 311 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 ETFBKMTQ8IXQ9 262 aa6.79□□□□□ -1.32
PTPN4-210ENST00000485247 TDRD7Q8NHU6 1098 aaKnown RBP6.79□□□□□ -1.32
PTPN4-210ENST00000485247 IFT43Q96FT9 208 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms