RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	ARRDC4	Q8NCT1	418 aa		28.02	■■■□□ 2.08
CPNE1-223	ENST00000475146	VAT1L	Q9HCJ6	419 aa		28.02	■■■□□ 2.08
CPNE1-223	ENST00000475146	PTPDC1	A2A3K4	754 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	SOWAHB	A6NEL2	793 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146		H0YGN5	161 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	DNM1L	O00429	736 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	PRC1	O43663	620 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	BAAT	Q14032	418 aa	Predicted RBP	28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	GJC2	Q5T442	439 aa	Predicted RBP	28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	CLEC4D	Q8WXI8	215 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	NR2E3	Q9Y5X4	410 aa		28.01	■■■□□ 2.07
CPNE1-223	ENST00000475146	KLRF2	D3W0D1	207 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	MCM5	P33992	734 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	GRM4	Q14833	912 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	CATIP	Q7Z7H3	387 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	IGDCC4	Q8TDY8	1250 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	XPNPEP3	Q9NQH7	507 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	MAD2L2	Q9UI95	211 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	MCM3AP	O60318	1980 aa		28	■■■□□ 2.07
CPNE1-223	ENST00000475146	ASB14	A6NK59	587 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	KBTBD13	C9JR72	458 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	COL6A1	P12109	1028 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	ACVR2B	Q13705	512 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	QRICH1	Q2TAL8	776 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	SLC30A10	Q6XR72	485 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	LENG1	Q96BZ8	264 aa	Predicted RBP	27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	ABHD16B	Q9H3Z7	469 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	JMJD4	Q9H9V9	463 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	FAM184B	Q9ULE4	1060 aa		27.99	■■■□□ 2.07
CPNE1-223	ENST00000475146	PALM3	A6NDB9	673 aa	Predicted RBP	27.98	■■■□□ 2.07
CPNE1-223	ENST00000475146	RNF207	Q6ZRF8	634 aa		27.98	■■■□□ 2.07
CPNE1-223	ENST00000475146	PURB	Q96QR8	312 aa	Known RBP	27.98	■■■□□ 2.07
CPNE1-223	ENST00000475146	SENP6	Q9GZR1	1112 aa	Predicted RBP	27.98	■■■□□ 2.07
CPNE1-223	ENST00000475146	LY9	Q9HBG7	655 aa		27.98	■■■□□ 2.07
CPNE1-223	ENST00000475146	GPHN	Q9NQX3	736 aa	Predicted RBP	27.98	■■■□□ 2.07
CPNE1-223	ENST00000475146	ASTN1	O14525	1302 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	ABCB11	O95342	1321 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	CALML3	P27482	149 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	NFXL1	Q6ZNB6	911 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	FBXO11	Q86XK2	927 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	C7orf61	Q8IZ16	206 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	NUP133	Q8WUM0	1156 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	TMEM87B	Q96K49	555 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	MTA3	Q9BTC8	594 aa		27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	ADD3	Q9UEY8	706 aa	Known RBP	27.97	■■■□□ 2.07
CPNE1-223	ENST00000475146	PGK1	P00558	417 aa		27.96	■■■□□ 2.07
CPNE1-223	ENST00000475146	TROAP	Q12815	778 aa		27.96	■■■□□ 2.07
CPNE1-223	ENST00000475146	LRRC41	Q15345	812 aa		27.96	■■■□□ 2.07
CPNE1-223	ENST00000475146	ALPK3	Q96L96	1907 aa		27.96	■■■□□ 2.07
CPNE1-223	ENST00000475146	LCT	P09848	1927 aa		27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	SH2B2	O14492	632 aa	Predicted RBP	27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	RPS6	P62753	249 aa	Known RBP	27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	COL9A3	Q14050	684 aa	Predicted RBP	27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	CCDC144B	Q3MJ40	725 aa		27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	ZNF654	Q8IZM8	581 aa		27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	DDX49	Q9Y6V7	483 aa	Known RBP	27.95	■■■□□ 2.06
CPNE1-223	ENST00000475146	CCDC69	A6NI79	296 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	DDAH1	O94760	285 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	RNF180	Q86T96	592 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	HOMER1	Q86YM7	354 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	MYL10	Q9BUA6	226 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	LRRC2	Q9BYS8	371 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	KATNBL1	Q9H079	304 aa		27.94	■■■□□ 2.06
CPNE1-223	ENST00000475146	MYH6	P13533	1939 aa		27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	ALDH5A1	P51649	535 aa	Predicted RBP	27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	LRRC26	Q2I0M4	334 aa		27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	EEPD1	Q7L9B9	569 aa		27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	TMTC2	Q8N394	836 aa		27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	CTCFL	Q8NI51	663 aa	Predicted RBP	27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	NEK1	Q96PY6	1258 aa		27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	AMN	Q9BXJ7	453 aa		27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	MRPL11	Q9Y3B7	192 aa	Known RBP	27.93	■■■□□ 2.06
CPNE1-223	ENST00000475146	ZBTB5	O15062	677 aa		27.92	■■■□□ 2.06
CPNE1-223	ENST00000475146	ATN1	P54259	1190 aa	Predicted RBP	27.92	■■■□□ 2.06
CPNE1-223	ENST00000475146	FBXO16	Q8IX29	292 aa	Predicted RBP	27.92	■■■□□ 2.06
CPNE1-223	ENST00000475146	RASEF	Q8IZ41	740 aa		27.92	■■■□□ 2.06
CPNE1-223	ENST00000475146	MTMR8	Q96EF0	704 aa		27.92	■■■□□ 2.06
CPNE1-223	ENST00000475146	SYNRG	Q9UMZ2	1314 aa		27.92	■■■□□ 2.06
CPNE1-223	ENST00000475146	DUSP11	O75319	330 aa	Known RBP	27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	KIF5B	P33176	963 aa		27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	KRT32	Q14532	448 aa		27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	SLC35G1	Q2M3R5	365 aa		27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	NOL8	Q76FK4	1167 aa	Known RBP	27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	MCF2L2	Q86YR7	1114 aa		27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	LRRC37A2	A6NM11	1700 aa		27.91	■■■□□ 2.06
CPNE1-223	ENST00000475146	ADCY6	O43306	1168 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	ADAMTS4	O75173	837 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	REC8	O95072	547 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	ADCYAP1R1	P41586	468 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	LIFR	P42702	1097 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	RGS22	Q8NE09	1264 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	FERMT2	Q96AC1	680 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	PIGS	Q96S52	555 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	MPHOSPH6	Q99547	160 aa	Known RBP	27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	MAP3K14	Q99558	947 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	RIOX1	Q9H6W3	641 aa		27.9	■■■□□ 2.06
CPNE1-223	ENST00000475146	LOC102724159	A0A0B4J2E5	919 aa		27.89	■■■□□ 2.06
CPNE1-223	ENST00000475146	TNFAIP2	Q03169	654 aa		27.89	■■■□□ 2.06
CPNE1-223	ENST00000475146	PWP2	Q15269	919 aa	Known RBP	27.89	■■■□□ 2.06
CPNE1-223	ENST00000475146	ADCK5	Q3MIX3	580 aa		27.89	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms