RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 POLD4Q9HCU8 107 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 ATP8A2Q9NTI2 1148 aa17.94■□□□□ 0.46
PCDH1-203ENST00000394536 ZRANB2O95218 330 aaKnown RBP eCLIP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 GTF2A1P52655 376 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 GSTO1P78417 241 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 TBX2Q13207 712 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 DCAF17Q5H9S7 520 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 TRIM58Q8NG06 486 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 NOX5Q96PH1 765 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 LGALS16A8MUM7 142 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 RIMBP2O15034 1052 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 SEMA3EO15041 775 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 VEGFAP15692 232 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 CACNB1Q02641 598 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 PFKFB3Q16875 520 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 GPATCH11Q8N954 259 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 PNPLA7Q6ZV29 1317 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 TROAPQ12815 778 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 ZNF512BQ96KM6 892 aaPredicted RBP17.93■□□□□ 0.46
PCDH1-203ENST00000394536 MINPP1Q9UNW1 487 aa17.93■□□□□ 0.46
PCDH1-203ENST00000394536 XDHP47989 1333 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 FCER1AP12319 257 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 EIF4A3P38919 411 aaKnown RBP17.92■□□□□ 0.46
PCDH1-203ENST00000394536 SARSP49591 514 aaKnown RBP17.92■□□□□ 0.46
PCDH1-203ENST00000394536 KLK7P49862 253 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 LIG3P49916 1009 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 GNGT1P63211 74 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 NEK8Q86SG6 692 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 CCDC84Q86UT8 332 aaPredicted RBP17.92■□□□□ 0.46
PCDH1-203ENST00000394536 TNS3Q68CZ2 1445 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 TBCKQ8TEA7 893 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 USP8P40818 1118 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 SLC9C1Q4G0N8 1177 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 VPS36Q86VN1 386 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 LRRC47Q8N1G4 583 aaKnown RBP17.92■□□□□ 0.46
PCDH1-203ENST00000394536 IPO4Q8TEX9 1081 aaKnown RBP17.92■□□□□ 0.46
PCDH1-203ENST00000394536 FAM84BQ96KN1 310 aaPredicted RBP17.92■□□□□ 0.46
PCDH1-203ENST00000394536 KANSL2Q9H9L4 492 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 MLXIPQ9HAP2 919 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 DUSP10Q9Y6W6 482 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 ARHGAP23Q9P227 1491 aa17.92■□□□□ 0.46
PCDH1-203ENST00000394536 WNT7AO00755 349 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 ZBED6P86452 979 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 TXNRD1Q16881 649 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 RSRC2Q7L4I2 434 aaKnown RBP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 TRIM31Q9BZY9 425 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 ZNF219Q9P2Y4 722 aaPredicted RBP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 ERLIN2O94905 339 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 CCNE1P24864 410 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 BEND6Q5SZJ8 279 aaPredicted RBP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 ZFYVE27Q5T4F4 411 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 OTUD6BQ8N6M0 293 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 KIFC2Q96AC6 838 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 COA7Q96BR5 231 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 NGLY1Q96IV0 654 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 TMEM60Q9H2L4 133 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 KCND1Q9NSA2 647 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 MKRN1Q9UHC7 482 aaKnown RBP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 SAMM50Q9Y512 469 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 POLR2FP61218 127 aaKnown RBP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 PKN1Q16512 942 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 BRIP1Q9BX63 1249 aa17.91■□□□□ 0.46
PCDH1-203ENST00000394536 LIMA1Q9UHB6 759 aaKnown RBP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.91■□□□□ 0.46
PCDH1-203ENST00000394536 GGCXP38435 758 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 EHHADHQ08426 723 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 TMEM139Q8IV31 216 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 ZNF34Q8IZ26 560 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 RPGRIP1Q96KN7 1286 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 ZNF804AQ7Z570 1209 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 DHTKD1Q96HY7 919 aaPredicted RBP17.9■□□□□ 0.46
PCDH1-203ENST00000394536 SMARCAL1Q9NZC9 954 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 TCEAL9Q9UHQ7 104 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 ZNF804BA4D1E1 1349 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 SMIM23A6NLE4 172 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 KLHL30Q0D2K2 578 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 ARL6IP4Q66PJ3 421 aaKnown RBP17.9■□□□□ 0.46
PCDH1-203ENST00000394536 CERS3Q8IU89 383 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 PIGSQ96S52 555 aa17.9■□□□□ 0.46
PCDH1-203ENST00000394536 CEP104O60308 925 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 GUCY2DQ02846 1103 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 ANKZF1Q9H8Y5 726 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 TLDC2A0PJX2 215 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 UFL1O94874 794 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 CFAP221Q4G0U5 840 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 FAM182BQ5T319 152 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 WDR66Q8TBY9 1149 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 NYXQ9GZU5 481 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 SRP68Q9UHB9 627 aaKnown RBP17.89■□□□□ 0.45
PCDH1-203ENST00000394536 NCK2O43639 380 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 FTCDO95954 541 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 FGFR2P21802 821 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 EVX2Q03828 476 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 STK4Q13043 487 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 VGLL2Q8N8G2 317 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 SELENOOQ9BVL4 669 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 LRRC27Q9C0I9 530 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 HYOU1Q9Y4L1 999 aa17.89■□□□□ 0.45
PCDH1-203ENST00000394536 ANKRD40Q6AI12 368 aa17.88■□□□□ 0.45
PCDH1-203ENST00000394536 LSM14BQ9BX40 385 aaKnown RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms