RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SNAP25P60880 206 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 KRT25Q7Z3Z0 450 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 CCDC12Q8WUD4 166 aaPredicted RBP11.64□□□□□ -0.55
LIMA1-201ENST00000341247 RWDD2AQ9UIY3 292 aa11.64□□□□□ -0.55
LIMA1-201ENST00000341247 MYH1P12882 1939 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 SRGNP10124 158 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 PRKCSHP14314 528 aaPredicted RBP11.63□□□□□ -0.55
LIMA1-201ENST00000341247 CASQ1P31415 396 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 PDE4DQ08499 809 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 TCP11X2Q5H9J9 407 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 SLC27A3Q5K4L6 730 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 CDC42EP5Q6NZY7 148 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 UBE2Q2Q8WVN8 375 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 AKT1S1Q96B36 256 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 CTAGE1Q96RT6 745 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 LZTS2Q9BRK4 669 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 RMND1Q9NWS8 449 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 SLC37A4O43826 429 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 APBA3O96018 575 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 ABL1P00519 1130 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 ANKRD20A12PQ8NF67 263 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 COA1Q9GZY4 146 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 TMX4Q9H1E5 349 aaPredicted RBP11.63□□□□□ -0.55
LIMA1-201ENST00000341247 MARCH6O60337 910 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 MFAP3LO75121 409 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 TAL1P17542 331 aaPredicted RBP11.63□□□□□ -0.55
LIMA1-201ENST00000341247 KCNJ6P48051 423 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 ARHGAP29Q52LW3 1261 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 TMED8Q6PL24 325 aaPredicted RBP11.63□□□□□ -0.55
LIMA1-201ENST00000341247 DAGLBQ8NCG7 672 aa11.63□□□□□ -0.55
LIMA1-201ENST00000341247 CGNQ9P2M7 1197 aaKnown RBP11.63□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L10C9JJH3 530 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 PYM1Q9BRP8 204 aaKnown RBP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 SLC39A2Q9NP94 309 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 MORC2Q9Y6X9 1032 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 NKRFO15226 690 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 KLRC4O43908 158 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 TFRCP02786 760 aaKnown RBP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 TPM1P09493 284 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 IDEP14735 1019 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 ADCY7P51828 1080 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 STK4Q13043 487 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 GALNT17Q6IS24 598 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 ADGRF4Q8IZF3 695 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 ADSSL1Q8N142 457 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 L2HGDHQ9H9P8 463 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 SSBP05455 408 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 CCDC175P0C221 793 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 KRT9P35527 623 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 CALCRLQ16602 461 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 PCMTD1Q96MG8 357 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-201ENST00000341247 NUDT12Q9BQG2 462 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 EXOC1Q9NV70 894 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 PARP3Q9Y6F1 533 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 FOCADQ5VW36 1801 aa11.62□□□□□ -0.55
LIMA1-201ENST00000341247 TTLL1O95922 423 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 SHMT1P34896 483 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 PBX1P40424 430 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 MCM6Q14566 821 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 SAMD1Q6SPF0 538 aaPredicted RBP11.61□□□□□ -0.55
LIMA1-201ENST00000341247 IRF2BP1Q8IU81 584 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 UBXN4Q92575 508 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 TEKT1Q969V4 418 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 SLF1Q9BQI6 1058 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 TFR2Q9UP52 801 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CENPFP49454 3210 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 B4DLN1 442 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 PPP1R11O60927 126 aaPredicted RBP11.61□□□□□ -0.55
LIMA1-201ENST00000341247 KLK7P49862 253 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CCDC93Q567U6 631 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 TEX35Q5T0J7 233 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 APOBEC3HQ6NTF7 200 aaKnown RBP11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CSGALNACT2Q8N6G5 542 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CDK5RAP3Q96JB5 506 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CCSER1Q9C0I3 900 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 JMJD4Q9H9V9 463 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 KBTBD4Q9NVX7 518 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 LRWD1Q9UFC0 647 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L15C9J2P7 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L13C9JLJ4 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L11C9JVI0 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L18D6R9N7 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L22D6RA61 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L17D6RBQ6 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L19D6RCP7 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L20D6RJB6 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 PSMA7O14818 248 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 GDF11O95390 407 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 GABPAQ06546 454 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L24Q0WX57 530 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 STIM1Q13586 685 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 USP17L6PQ6QN14 398 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CERS3Q8IU89 383 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 CHP1Q99653 195 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 MMTAG2Q9BU76 263 aaKnown RBP11.61□□□□□ -0.55
LIMA1-201ENST00000341247 ADGRG1Q9Y653 693 aa11.61□□□□□ -0.55
LIMA1-201ENST00000341247 PHLPP2Q6ZVD8 1323 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 EDIL3O43854 480 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 CHRNA5P30532 468 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms