RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 PDE4DQ08499 809 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 TBC1D8BQ0IIM8 1120 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 SPTY2D1Q68D10 685 aaPredicted RBP24.6■■□□□ 1.53
SHMT1-201ENST00000316694 DAGLBQ8NCG7 672 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 JAKMIP2Q96AA8 810 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 MMS19Q96T76 1030 aa24.6■■□□□ 1.53
SHMT1-201ENST00000316694 ZNHIT6Q9NWK9 470 aaKnown RBP24.6■■□□□ 1.53
SHMT1-201ENST00000316694 PHACTR2O75167 634 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 TUBBP07437 444 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 TXNRD1Q16881 649 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 LETM2Q2VYF4 491 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 ZNF444Q8N0Y2 327 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 DHTKD1Q96HY7 919 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 MKRN1Q9UHC7 482 aaKnown RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 CCNT1O60563 726 aaKnown RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 ASIC1P78348 528 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 IRX5P78411 483 aaPredicted RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 DIXDC1Q155Q3 683 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 HSP90B2PQ58FF3 399 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 ANKRD40Q6AI12 368 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 GALNT17Q6IS24 598 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 NOC3LQ8WTT2 800 aaKnown RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 ANKS1AQ92625 1134 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 P2RX5Q93086 422 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 CNOT6LQ96LI5 555 aaKnown RBP24.59■■□□□ 1.53
SHMT1-201ENST00000316694 PSD3Q9NYI0 1048 aa24.59■■□□□ 1.53
SHMT1-201ENST00000316694 LRRIQ3A6PVS8 624 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 LAD1O00515 517 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 KRT86O43790 486 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 IPO7O95373 1038 aaKnown RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 LDHBP07195 334 aaKnown RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 MTIF2P46199 727 aaKnown RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 WDR93Q6P2C0 686 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 AMOTL1Q8IY63 956 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 TMEM47Q9BQJ4 181 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 NHEJ1Q9H9Q4 299 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 NARFQ9UHQ1 456 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 CYLC1P35663 651 aaPredicted RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 STK4Q13043 487 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 MEA1Q16626 185 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 MUM1L1Q5H9M0 696 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 AMIGO3Q86WK7 504 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 TGFBRAP1Q8WUH2 860 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 CCDC47Q96A33 483 aaKnown RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 LACRTQ9GZZ8 138 aa24.58■■□□□ 1.53
SHMT1-201ENST00000316694 SAP30BPQ9UHR5 308 aaKnown RBP24.58■■□□□ 1.53
SHMT1-201ENST00000316694 FLT1P17948 1338 aa24.58■■□□□ 1.52
SHMT1-201ENST00000316694 MAST2Q6P0Q8 1798 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 RCCD1A6NED2 376 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 FCER1AP12319 257 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 PRPHP41219 470 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 NAPAP54920 295 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 RAD51AP2Q09MP3 1159 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 TRIM9Q9C026 710 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 TTYH3Q9C0H2 523 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 NYXQ9GZU5 481 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 CNTNAP4Q9C0A0 1308 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 MYH1P12882 1939 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 RASSF10A6NK89 507 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 KLRF2D3W0D1 207 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 OR52Z1P0C646 297 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 CCNE1P24864 410 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 USP14P54578 494 aa24.57■■□□□ 1.52
SHMT1-201ENST00000316694 MSL3Q8N5Y2 521 aaKnown RBP24.57■■□□□ 1.52
SHMT1-201ENST00000316694 NOC4LQ9BVI4 516 aaKnown RBP24.57■■□□□ 1.52
SHMT1-201ENST00000316694 BICDL2A1A5D9 508 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 GNPATO15228 680 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 CYP27A1Q02318 531 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 EHBP1Q8NDI1 1231 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 NUP58Q9BVL2 599 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 ZPR1O75312 459 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 PAPD7Q5XG87 772 aaKnown RBP24.56■■□□□ 1.52
SHMT1-201ENST00000316694 HPS3Q969F9 1004 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 CUEDC2Q9H467 287 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 DUSP10Q9Y6W6 482 aa24.56■■□□□ 1.52
SHMT1-201ENST00000316694 MACROD2A1Z1Q3 448 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 PALM3A6NDB9 673 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-201ENST00000316694 CAPN2P17655 700 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 TM4SF1P30408 202 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 TECP42680 631 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 TNNT3P45378 269 aaPredicted RBP24.55■■□□□ 1.52
SHMT1-201ENST00000316694 ZBED6P86452 979 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 MAPKAPK5Q8IW41 473 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 GOLGA5Q8TBA6 731 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 CAGE1Q8TC20 777 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 TPTE2Q6XPS3 522 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 FAM114A1Q8IWE2 563 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 AK8Q96MA6 479 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 ACBD3Q9H3P7 528 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 ANKIB1Q9P2G1 1089 aa24.55■■□□□ 1.52
SHMT1-201ENST00000316694 TULP2O00295 520 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 NONOQ15233 471 aaKnown RBP eCLIP24.54■■□□□ 1.52
SHMT1-201ENST00000316694 GRIK5Q16478 980 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 RETREG2Q8NC44 543 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 MAGEF1Q9HAY2 307 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 SMCO2A6NFE2 343 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 NKRFO15226 690 aaKnown RBP eCLIP24.54■■□□□ 1.52
SHMT1-201ENST00000316694 RPS6KA4O75676 772 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 FAM182BQ5T319 152 aa24.54■■□□□ 1.52
SHMT1-201ENST00000316694 ZMYND12Q9H0C1 365 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms