RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 KLRC3Q07444 240 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 C1orf53Q5VUE5 145 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 DIEXFQ68CQ4 756 aaKnown RBP11.12□□□□□ -0.63
CNOT9-202ENST00000295701 SNRNP48Q6IEG0 339 aaKnown RBP11.12□□□□□ -0.63
CNOT9-202ENST00000295701 RNF180Q86T96 592 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 CPXCR1Q8N123 301 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 CHMP4CQ96CF2 233 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 DDRGK1Q96HY6 314 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 SLF1Q9BQI6 1058 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 LRRCC1Q9C099 1032 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 MKNK2Q9HBH9 465 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 EPB41L4AQ9HCS5 686 aaPredicted RBP11.12□□□□□ -0.63
CNOT9-202ENST00000295701 CLIP2Q9UDT6 1046 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 DIS3Q9Y2L1 958 aaKnown RBP11.12□□□□□ -0.63
CNOT9-202ENST00000295701 M0R2C6 588 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 ADCY6O43306 1168 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 RNF40O75150 1001 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 AKR1A1P14550 325 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 FAAP100Q0VG06 881 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 PTGDRQ13258 359 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 KCNA10Q16322 511 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 SBK1Q52WX2 424 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 ZSCAN25Q6NSZ9 544 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 KLHDC9Q8NEP7 349 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 FGD4Q96M96 766 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 RAVER2Q9HCJ3 691 aaKnown RBP11.11□□□□□ -0.63
CNOT9-202ENST00000295701 NYAP2Q9P242 653 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 NRBP1Q9UHY1 535 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 ZHX1Q9UKY1 873 aaPredicted RBP11.11□□□□□ -0.63
CNOT9-202ENST00000295701 TACC3Q9Y6A5 838 aa11.11□□□□□ -0.63
CNOT9-202ENST00000295701 SPTBN5Q9NRC6 3674 aaKnown RBP11.11□□□□□ -0.63
CNOT9-202ENST00000295701 SYNRGQ9UMZ2 1314 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 DNAJC25-GNG10A0A024R161 153 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 IGKV6D-41A0A0C4DH26 115 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 KIAA0355O15063 1070 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 RAG1P15918 1043 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 ACLYP53396 1101 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 SMAD3P84022 425 aaKnown RBP11.1□□□□□ -0.63
CNOT9-202ENST00000295701 CCSAPQ6IQ19 270 aaPredicted RBP11.1□□□□□ -0.63
CNOT9-202ENST00000295701 LRRC47Q8N1G4 583 aaKnown RBP11.1□□□□□ -0.63
CNOT9-202ENST00000295701 KBTBD3Q8NAB2 608 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 MAFAQ8NHW3 353 aaPredicted RBP11.1□□□□□ -0.63
CNOT9-202ENST00000295701 KIFC2Q96AC6 838 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 DDX11Q96FC9 970 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 RNPC3Q96LT9 517 aaKnown RBP11.1□□□□□ -0.63
CNOT9-202ENST00000295701 TEX13BQ9BXU2 312 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 TMEM39AQ9NV64 488 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 ARPP21Q9UBL0 812 aaPredicted RBP11.1□□□□□ -0.63
CNOT9-202ENST00000295701 RCAN3Q9UKA8 241 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 CNPY2Q9Y2B0 182 aa11.1□□□□□ -0.63
CNOT9-202ENST00000295701 RNF113AO15541 343 aaKnown RBP11.09□□□□□ -0.63
CNOT9-202ENST00000295701 GPAA1O43292 621 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 PTGS1P23219 599 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 CNTN2Q02246 1040 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 ACVR2BQ13705 512 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 PRPF38AQ8NAV1 312 aaKnown RBP11.09□□□□□ -0.63
CNOT9-202ENST00000295701 APPBP2Q92624 585 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 CEP95Q96GE4 821 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 SEC62Q99442 399 aaKnown RBP11.09□□□□□ -0.63
CNOT9-202ENST00000295701 STARD7Q9NQZ5 370 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 ECHDC1Q9NTX5 307 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 FAM184BQ9ULE4 1060 aa11.09□□□□□ -0.63
CNOT9-202ENST00000295701 DDX49Q9Y6V7 483 aaKnown RBP11.09□□□□□ -0.63
CNOT9-202ENST00000295701 GRXCR1A8MXD5 290 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 ZBED4O75132 1171 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 COPB2P35606 906 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 SNAP25P60880 206 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 FPGSQ05932 587 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 GRIN2CQ14957 1233 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 MAMDC4Q6UXC1 1216 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 C16orf59Q7L2K0 433 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 ANKRD33Q7Z3H0 272 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 IFNL3Q8IZI9 196 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 TSEN34Q9BSV6 310 aaKnown RBP11.08□□□□□ -0.64
CNOT9-202ENST00000295701 SLC38A10Q9HBR0 1119 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 INCENPQ9NQS7 918 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 HOMER2Q9NSB8 354 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 MTMR4Q9NYA4 1195 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 SYNGAP1Q96PV0 1343 aa11.08□□□□□ -0.64
CNOT9-202ENST00000295701 ROBO3Q96MS0 1386 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.07□□□□□ -0.64
CNOT9-202ENST00000295701 DCDC2CA8MYV0 355 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 CTAGE5O15320 804 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 DUSP11O75319 330 aaKnown RBP11.07□□□□□ -0.64
CNOT9-202ENST00000295701 TIMP1P01033 207 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 APPP05067 770 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 ASGR1P07306 291 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 C6orf222P0C671 652 aaPredicted RBP11.07□□□□□ -0.64
CNOT9-202ENST00000295701 ACRP10323 421 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 TDO2P48775 406 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 CDK7P50613 346 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 BEX3Q00994 111 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 CCDC144BQ3MJ40 725 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 SWT1Q5T5J6 900 aaKnown RBP11.07□□□□□ -0.64
CNOT9-202ENST00000295701 SLFN13Q68D06 897 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 GIMAP6Q6P9H5 292 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 CCDC144CPQ8IYA2 1237 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 ZNF444Q8N0Y2 327 aaPredicted RBP11.07□□□□□ -0.64
CNOT9-202ENST00000295701 ANKRD35Q8N283 1001 aa11.07□□□□□ -0.64
CNOT9-202ENST00000295701 USP38Q8NB14 1042 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms