RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	DBF2	P22204	572 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	ACP1	P32463	125 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	SPR1	P32603	445 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	MCM7	P38132	845 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	CTP1	P38152	299 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	YBR259W	P38338	688 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	ZRG8	P40021	1076 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	CHS6	P40955	746 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	YGR210C	P42942	411 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	MRK1	P50873	501 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	YML6	P51998	286 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	PEF1	P53238	335 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	ELA1	P53861	379 aa	Predicted RBP	4.97	□□□□□ -1.61
CDC4	YFL009W	HER2	Q03557	464 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	RNH1	Q04740	348 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	FEX1	Q08913	375 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	YPL260W	Q08977	551 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	TY3A-G	Q12173	290 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	TY3A-I	Q99219	290 aa		4.97	□□□□□ -1.61
CDC4	YFL009W	RIM15	P43565	1770 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	YGL041W-A	P0C5N3	154 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	YER152C	P10356	443 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	MER1	P16523	270 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	YSP3	P25036	478 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	PTP2	P29461	750 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	MNN9	P39107	395 aa	Known RBP	4.96	□□□□□ -1.61
CDC4	YFL009W	VHR1	P40522	640 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	DOT5	P40553	215 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	SAE2	P46946	345 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	LSM8	P47093	109 aa	Known RBP	4.96	□□□□□ -1.61
CDC4	YFL009W	YGR045C	P53229	120 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	NOP19	P53317	196 aa	Predicted RBP	4.96	□□□□□ -1.61
CDC4	YFL009W	RCF2	P53721	224 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	CAF120	P53836	1060 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	DID2	P69771	204 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	YDR222W	Q04925	415 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	ENT2	Q05785	613 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	NGL1	Q08213	363 aa	Known RBP	4.96	□□□□□ -1.61
CDC4	YFL009W	LDB17	Q12342	491 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	GTT2	Q12390	233 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	AVL9	Q12500	764 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	YGR161W-C	Q3E744	92 aa		4.96	□□□□□ -1.61
CDC4	YFL009W	TPK2	P06245	380 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	CHS2	P14180	963 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	PMS1	P14242	873 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	ADP1	P25371	1049 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	CCR4	P31384	837 aa	Known RBP	4.96	□□□□□ -1.62
CDC4	YFL009W	NUP2	P32499	720 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	MIA40	P36046	403 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	ARA1	P38115	344 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	MSR1	P38714	643 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	GAA1	P39012	614 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	SEN34	P39707	275 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	KRE29	P40026	464 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	HPM1	P40481	377 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	BPL1	P48445	690 aa	Predicted RBP	4.96	□□□□□ -1.62
CDC4	YFL009W	STB4	P50104	949 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	EFM5	P53200	248 aa	Known RBP	4.96	□□□□□ -1.62
CDC4	YFL009W	RNY1	Q02933	434 aa	Known RBP	4.96	□□□□□ -1.62
CDC4	YFL009W	RSC9	Q03124	581 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	FAR10	Q06001	478 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	THI20	Q08224	551 aa		4.96	□□□□□ -1.62
CDC4	YFL009W	NBA1	Q08229	501 aa	Known RBP	4.96	□□□□□ -1.62
CDC4	YFL009W	YRF1-3	P0CX14	1859 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	YRF1-7	P0CX15	1859 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	YRF1-6	P53819	1859 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	VPS33	P20795	691 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	SGV1	P23293	657 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	CAM1	P29547	415 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	HEM12	P32347	362 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	UGP1	P32861	499 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	IMP3	P32899	183 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	PTR2	P32901	601 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	TYE7	P33122	291 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	FMP23	P38231	175 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	PNT1	P38969	423 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	LCB2	P40970	561 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	ROK1	P45818	564 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	SRB7	P47822	140 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	TWF1	P53250	332 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	RTS3	P53289	263 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	COS7	Q07788	383 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	AAD15	Q08361	143 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	HRK1	Q08732	759 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	DCP1	Q12517	231 aa	Predicted RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	YIL002W-A	Q3E7Z5	69 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	MED11	Q99278	115 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	MYO1	P08964	1928 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	ILV1	P00927	576 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	RHO1	P06780	209 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	FBA1	P14540	359 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	PRP22	P24384	1145 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	URA7	P28274	579 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	CYS4	P32582	507 aa	Known RBP	4.95	□□□□□ -1.62
CDC4	YFL009W	ERT1	P38140	529 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	YJL206C	P39529	758 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	EXO1	P39875	702 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	PEP8	P40335	379 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	COS4	P43542	379 aa		4.95	□□□□□ -1.62
CDC4	YFL009W	SNZ3	P43545	298 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 31.8 ms