RNA–Protein interactions for RNA: ENST00000604743.5

TUBE1-208, Transcript of tubulin epsilon 1, humanhuman

TSL 3

Gene TUBE1, Length 959 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBE1-208ENST00000604743 CASC1Q6TDU7 716 aa16.9■□□□□ 0.3
TUBE1-208ENST00000604743 ANKRD35Q8N283 1001 aa16.9■□□□□ 0.3
TUBE1-208ENST00000604743 NCOA7Q8NI08 942 aa16.9■□□□□ 0.3
TUBE1-208ENST00000604743 ZNF536O15090 1300 aa16.9■□□□□ 0.3
TUBE1-208ENST00000604743 MCM3APO60318 1980 aa16.89■□□□□ 0.3
TUBE1-208ENST00000604743 FRMPD3Q5JV73 1810 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 CDC45O75419 566 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 TAL1P17542 331 aaPredicted RBP16.89■□□□□ 0.29
TUBE1-208ENST00000604743 ZNF792Q3KQV3 632 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 PRAMEF19Q5SWL8 479 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 STOX1Q6ZVD7 989 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 CHST3Q7LGC8 479 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 CHST13Q8NET6 341 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 TRERF1Q96PN7 1200 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 UBA5Q9GZZ9 404 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 CRISPLD2Q9H0B8 497 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 CPVLQ9H3G5 476 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 RNF146Q9NTX7 359 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 PPP4R2Q9NY27 417 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 FBXO40Q9UH90 709 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 CCPG1Q9ULG6 757 aa16.89■□□□□ 0.29
TUBE1-208ENST00000604743 IFIT3O14879 490 aaKnown RBP16.88■□□□□ 0.29
TUBE1-208ENST00000604743 SNHG28P0DPA3 235 aa16.88■□□□□ 0.29
TUBE1-208ENST00000604743 BTNL9Q6UXG8 535 aa16.88■□□□□ 0.29
TUBE1-208ENST00000604743 TRPV1Q8NER1 839 aa16.88■□□□□ 0.29
TUBE1-208ENST00000604743 DIS3LQ8TF46 1054 aaKnown RBP16.88■□□□□ 0.29
TUBE1-208ENST00000604743 ANKS1AQ92625 1134 aa16.88■□□□□ 0.29
TUBE1-208ENST00000604743 RANBP17Q9H2T7 1088 aaKnown RBP16.88■□□□□ 0.29
TUBE1-208ENST00000604743 ACAD9Q9H845 621 aa16.88■□□□□ 0.29
TUBE1-208ENST00000604743 ERICH2A1L162 156 aa16.87■□□□□ 0.29
TUBE1-208ENST00000604743 CYBAP13498 195 aa16.87■□□□□ 0.29
TUBE1-208ENST00000604743 SEC23AQ15436 765 aa16.87■□□□□ 0.29
TUBE1-208ENST00000604743 MUM1L1Q5H9M0 696 aa16.87■□□□□ 0.29
TUBE1-208ENST00000604743 GPATCH4Q5T3I0 446 aaKnown RBP16.87■□□□□ 0.29
TUBE1-208ENST00000604743 ANO1Q5XXA6 986 aa16.87■□□□□ 0.29
TUBE1-208ENST00000604743 DPF3Q92784 378 aa16.87■□□□□ 0.29
TUBE1-208ENST00000604743 PAWRQ96IZ0 340 aaKnown RBP16.87■□□□□ 0.29
TUBE1-208ENST00000604743 SLC27A2O14975 620 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 DHX16O60231 1041 aaKnown RBP16.86■□□□□ 0.29
TUBE1-208ENST00000604743 IGHA2P01877 340 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 ICAM1P05362 532 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 PARP1P09874 1014 aaKnown RBP16.86■□□□□ 0.29
TUBE1-208ENST00000604743 TKFCQ3LXA3 575 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 CREB3L3Q68CJ9 461 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 LHX8Q68G74 356 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 TINF2Q9BSI4 451 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 DDX20Q9UHI6 824 aaKnown RBP16.86■□□□□ 0.29
TUBE1-208ENST00000604743 OGDHLQ9ULD0 1010 aa16.86■□□□□ 0.29
TUBE1-208ENST00000604743 DIS3Q9Y2L1 958 aaKnown RBP16.86■□□□□ 0.29
TUBE1-208ENST00000604743 BAZ2BQ9UIF8 2168 aaKnown RBP16.85■□□□□ 0.29
TUBE1-208ENST00000604743 WTAPQ15007 396 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 SART3Q15020 963 aaKnown RBP16.85■□□□□ 0.29
TUBE1-208ENST00000604743 ASPRV1Q53RT3 343 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 NSMFQ6X4W1 530 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 NECAB2Q7Z6G3 386 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 UBE2Q1Q7Z7E8 422 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 SENP2Q9HC62 589 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 VAT1LQ9HCJ6 419 aa16.85■□□□□ 0.29
TUBE1-208ENST00000604743 A1CFQ9NQ94 594 aaKnown RBP16.85■□□□□ 0.29
TUBE1-208ENST00000604743 DNAJC25-GNG10A0A024R161 153 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 POTEB2H3BUK9 544 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 MYCNP04198 464 aaPredicted RBP16.84■□□□□ 0.29
TUBE1-208ENST00000604743 CAPN2P17655 700 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 CNTN2Q02246 1040 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 TMEM67Q5HYA8 995 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 ERICH6BQ5W0A0 696 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 MB21D2Q8IYB1 491 aaPredicted RBP16.84■□□□□ 0.29
TUBE1-208ENST00000604743 ANKLE1Q8NAG6 615 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 HTATIP2Q9BUP3 242 aa16.84■□□□□ 0.29
TUBE1-208ENST00000604743 MSCO60682 206 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 ANTXR2P58335 489 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 NECTIN1Q15223 517 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 USH1GQ495M9 461 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.83■□□□□ 0.28
TUBE1-208ENST00000604743 ADGRF4Q8IZF3 695 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 STAG2Q8N3U4 1231 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 CNPY2Q9Y2B0 182 aa16.83■□□□□ 0.28
TUBE1-208ENST00000604743 ALPK3Q96L96 1907 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 PFASO15067 1338 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 SEPT4O43236 478 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 PRC1O43663 620 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 MNX1P50219 401 aaPredicted RBP16.82■□□□□ 0.28
TUBE1-208ENST00000604743 CDC37Q16543 378 aaPredicted RBP16.82■□□□□ 0.28
TUBE1-208ENST00000604743 RNF20Q5VTR2 975 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 FGD4Q96M96 766 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 C11orf49Q9H6J7 331 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 GPHNQ9NQX3 736 aaPredicted RBP16.82■□□□□ 0.28
TUBE1-208ENST00000604743 ZHX1Q9UKY1 873 aaPredicted RBP16.82■□□□□ 0.28
TUBE1-208ENST00000604743 LCTP09848 1927 aa16.82■□□□□ 0.28
TUBE1-208ENST00000604743 CEP290O15078 2479 aa16.81■□□□□ 0.28
TUBE1-208ENST00000604743 PTPDC1A2A3K4 754 aa16.81■□□□□ 0.28
TUBE1-208ENST00000604743 KLRF2D3W0D1 207 aa16.81■□□□□ 0.28
TUBE1-208ENST00000604743 NFIBO00712 420 aa16.81■□□□□ 0.28
TUBE1-208ENST00000604743 SNAI1O95863 264 aaPredicted RBP16.81■□□□□ 0.28
TUBE1-208ENST00000604743 MCM5P33992 734 aa16.81■□□□□ 0.28
TUBE1-208ENST00000604743 COL9A3Q14050 684 aaPredicted RBP16.81■□□□□ 0.28
TUBE1-208ENST00000604743 GJC2Q5T442 439 aaPredicted RBP16.81■□□□□ 0.28
TUBE1-208ENST00000604743 PRPF38BQ5VTL8 546 aaKnown RBP16.81■□□□□ 0.28
TUBE1-208ENST00000604743 FAM133AQ8N9E0 248 aa16.81■□□□□ 0.28
TUBE1-208ENST00000604743 IGDCC4Q8TDY8 1250 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms