RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MSCO60682 206 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 SLC4A3P48751 1232 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 SYDE2Q5VT97 1194 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 TTBK2Q6IQ55 1244 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 RALYLQ86SE5 291 aaKnown RBP19.01■□□□□ 0.63
TRIM28-206ENST00000595974 DDX11Q96FC9 970 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 RANBP17Q9H2T7 1088 aaKnown RBP19.01■□□□□ 0.63
TRIM28-206ENST00000595974 ACAD9Q9H845 621 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 GPCPD1Q9NPB8 672 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 CEP290O15078 2479 aa19.01■□□□□ 0.63
TRIM28-206ENST00000595974 ALPK3Q96L96 1907 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 DNAJC25-GNG10A0A024R161 153 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 SLC16A2P36021 539 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 PRPF38BQ5VTL8 546 aaKnown RBP19■□□□□ 0.63
TRIM28-206ENST00000595974 CASC1Q6TDU7 716 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 AGBL1Q96MI9 1066 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 HTATIP2Q9BUP3 242 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 LSG1Q9H089 658 aaKnown RBP19■□□□□ 0.63
TRIM28-206ENST00000595974 HOMER2Q9NSB8 354 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 RNF146Q9NTX7 359 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 NRBP1Q9UHY1 535 aa19■□□□□ 0.63
TRIM28-206ENST00000595974 E7EWF7 191 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 ICAM1P05362 532 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 IFIT1BQ5T764 474 aaKnown RBP18.99■□□□□ 0.63
TRIM28-206ENST00000595974 ERICH6BQ5W0A0 696 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 LHX8Q68G74 356 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 CCDC174Q6PII3 467 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 CYB5R4Q7L1T6 521 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 ANKRD35Q8N283 1001 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 MSL3Q8N5Y2 521 aaKnown RBP18.99■□□□□ 0.63
TRIM28-206ENST00000595974 TRPV1Q8NER1 839 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 NCOA7Q8NI08 942 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 DDX20Q9UHI6 824 aaKnown RBP18.99■□□□□ 0.63
TRIM28-206ENST00000595974 PNMA2Q9UL42 364 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 LCTP09848 1927 aa18.99■□□□□ 0.63
TRIM28-206ENST00000595974 CDC45O75419 566 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 ALAS1P13196 640 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 CNGA1P29973 690 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 SEC23AQ15436 765 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 ASPRV1Q53RT3 343 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 ZNF467Q7Z7K2 595 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-206ENST00000595974 TINF2Q9BSI4 451 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 ANO2Q9NQ90 1003 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 CCPG1Q9ULG6 757 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 TAF6LQ9Y6J9 622 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 PFASO15067 1338 aa18.98■□□□□ 0.63
TRIM28-206ENST00000595974 SEPT4O43236 478 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 SNAP25P60880 206 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 SART3Q15020 963 aaKnown RBP18.97■□□□□ 0.63
TRIM28-206ENST00000595974 STOX1Q6ZVD7 989 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 NECAB2Q7Z6G3 386 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 TRERF1Q96PN7 1200 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 A1CFQ9NQ94 594 aaKnown RBP18.97■□□□□ 0.63
TRIM28-206ENST00000595974 WDR19Q8NEZ3 1342 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 SYNGAP1Q96PV0 1343 aa18.97■□□□□ 0.63
TRIM28-206ENST00000595974 ERICH2A1L162 156 aa18.96■□□□□ 0.63
TRIM28-206ENST00000595974 DIS3LQ8TF46 1054 aaKnown RBP18.96■□□□□ 0.63
TRIM28-206ENST00000595974 PAWRQ96IZ0 340 aaKnown RBP18.96■□□□□ 0.63
TRIM28-206ENST00000595974 LRRC37A2A6NM11 1700 aa18.95■□□□□ 0.62
TRIM28-206ENST00000595974 IFIT3O14879 490 aaKnown RBP18.95■□□□□ 0.62
TRIM28-206ENST00000595974 PARP1P09874 1014 aaKnown RBP18.95■□□□□ 0.62
TRIM28-206ENST00000595974 GOLGA8HP0CJ92 632 aa18.95■□□□□ 0.62
TRIM28-206ENST00000595974 MNX1P50219 401 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-206ENST00000595974 MAMDC4Q6UXC1 1216 aa18.95■□□□□ 0.62
TRIM28-206ENST00000595974 MB21D2Q8IYB1 491 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-206ENST00000595974 CNPY2Q9Y2B0 182 aa18.95■□□□□ 0.62
TRIM28-206ENST00000595974 POTEB2H3BUK9 544 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 SLC27A2O14975 620 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 MUM1L1Q5H9M0 696 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 FAM133AQ8N9E0 248 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 FGD4Q96M96 766 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 C11orf49Q9H6J7 331 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 PPP4R2Q9NY27 417 aa18.94■□□□□ 0.62
TRIM28-206ENST00000595974 WTAPQ15007 396 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 NECTIN1Q15223 517 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 PRAMEF19Q5SWL8 479 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 CREB3L3Q68CJ9 461 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 MTA3Q9BTC8 594 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 UBA5Q9GZZ9 404 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 CYP39A1Q9NYL5 469 aa18.93■□□□□ 0.62
TRIM28-206ENST00000595974 BAZ2BQ9UIF8 2168 aaKnown RBP18.93■□□□□ 0.62
TRIM28-206ENST00000595974 ANTXR2P58335 489 aa18.92■□□□□ 0.62
TRIM28-206ENST00000595974 CNTN2Q02246 1040 aa18.92■□□□□ 0.62
TRIM28-206ENST00000595974 TMEM67Q5HYA8 995 aa18.92■□□□□ 0.62
TRIM28-206ENST00000595974 RNF20Q5VTR2 975 aa18.92■□□□□ 0.62
TRIM28-206ENST00000595974 NSMFQ6X4W1 530 aa18.92■□□□□ 0.62
TRIM28-206ENST00000595974 DPF3Q92784 378 aa18.92■□□□□ 0.62
TRIM28-206ENST00000595974 DNM1LO00429 736 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 SNAI1O95863 264 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-206ENST00000595974 ZNF865P0CJ78 1059 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-206ENST00000595974 COL6A1P12109 1028 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 AKR1A1P14550 325 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 TAL1P17542 331 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-206ENST00000595974 CDC37Q16543 378 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-206ENST00000595974 ARMCX2Q7L311 632 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 CHST3Q7LGC8 479 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 ADGRF4Q8IZF3 695 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 CPVLQ9H3G5 476 aa18.91■□□□□ 0.62
TRIM28-206ENST00000595974 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-206ENST00000595974 ASB14A6NK59 587 aa18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms