RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ANTXR2P58335 489 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 TSGA10IPQ3SY00 556 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 MFSD14CQ5VZR4 134 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 CCDC174Q6PII3 467 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 NFXL1Q6ZNB6 911 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.16■□□□□ 0.02
CLK3-224ENST00000568605 CHST3Q7LGC8 479 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 TMTC2Q8N394 836 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 NEK1Q96PY6 1258 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 RNF146Q9NTX7 359 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 PFASO15067 1338 aa15.16■□□□□ 0.02
CLK3-224ENST00000568605 CCDC69A6NI79 296 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 DDAH1O94760 285 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 MYCP01106 439 aaPredicted RBP15.15■□□□□ 0.02
CLK3-224ENST00000568605 GOLGA8HP0CJ92 632 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 ALAS1P13196 640 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 CCL5P13501 91 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 PRKAR2AP13861 404 aaKnown RBP15.15■□□□□ 0.02
CLK3-224ENST00000568605 CAPN2P17655 700 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 HSPA4P34932 840 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 TTBK2Q6IQ55 1244 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 ANKRD35Q8N283 1001 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 DDX11Q96FC9 970 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 RNF208Q9H0X6 261 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 HMX1Q9NP08 348 aaPredicted RBP15.15■□□□□ 0.02
CLK3-224ENST00000568605 HOMER2Q9NSB8 354 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 ZNF536O15090 1300 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 RPTORQ8N122 1335 aa15.15■□□□□ 0.02
CLK3-224ENST00000568605 CALM1P0DP23 149 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 CALM2P0DP24 149 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 CALM3P0DP25 149 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 KIF5BP33176 963 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 LIFRP42702 1097 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 GRM4Q14833 912 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 MTFR1Q15390 333 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 OLFML2BQ68BL8 750 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 ZNF654Q8IZM8 581 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 CTCFLQ8NI51 663 aaPredicted RBP15.14■□□□□ 0.01
CLK3-224ENST00000568605 TRERF1Q96PN7 1200 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 LY9Q9HBG7 655 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 DIS3Q9Y2L1 958 aaKnown RBP15.14■□□□□ 0.01
CLK3-224ENST00000568605 RIPK3Q9Y572 518 aa15.14■□□□□ 0.01
CLK3-224ENST00000568605 SH2B2O14492 632 aaPredicted RBP15.13■□□□□ 0.01
CLK3-224ENST00000568605 FGD1P98174 961 aa15.13■□□□□ 0.01
CLK3-224ENST00000568605 CDC37Q16543 378 aaPredicted RBP15.13■□□□□ 0.01
CLK3-224ENST00000568605 CCL14Q16627 93 aa15.13■□□□□ 0.01
CLK3-224ENST00000568605 SYNE3Q6ZMZ3 975 aa15.13■□□□□ 0.01
CLK3-224ENST00000568605 DHX32Q7L7V1 743 aaKnown RBP15.13■□□□□ 0.01
CLK3-224ENST00000568605 IGDCC4Q8TDY8 1250 aa15.13■□□□□ 0.01
CLK3-224ENST00000568605 AGBL1Q96MI9 1066 aa15.13■□□□□ 0.01
CLK3-224ENST00000568605 MAP3K14Q99558 947 aa15.13■□□□□ 0.01
CLK3-224ENST00000568605 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.13■□□□□ 0.01
CLK3-224ENST00000568605 ALPK3Q96L96 1907 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 KLRF2D3W0D1 207 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 GJB1P08034 283 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 PSMA5P28066 241 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 TROAPQ12815 778 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 TRAF1Q13077 416 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 MAP3K21Q5TCX8 1036 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 BLOC1S2Q6QNY1 142 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 RASEFQ8IZ41 740 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 MSL3Q8N5Y2 521 aaKnown RBP15.12■□□□□ 0.01
CLK3-224ENST00000568605 NPLOC4Q8TAT6 608 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 NUP133Q8WUM0 1156 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 KCNB2Q92953 911 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 MAML3Q96JK9 1138 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 JAKMIP1Q96N16 626 aaKnown RBP15.12■□□□□ 0.01
CLK3-224ENST00000568605 UNC93B1Q9H1C4 597 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 PAK6Q9NQU5 681 aaPredicted RBP15.12■□□□□ 0.01
CLK3-224ENST00000568605 SLC12A7Q9Y666 1083 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 PDE4DIPQ5VU43 2346 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 ABCB11O95342 1321 aa15.12■□□□□ 0.01
CLK3-224ENST00000568605 PALM3A6NDB9 673 aaPredicted RBP15.11■□□□□ 0.01
CLK3-224ENST00000568605 COBLO75128 1261 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 PGK2P07205 417 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 GNAQP50148 359 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 SNAP25P60880 206 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 ZNF467Q7Z7K2 595 aaPredicted RBP15.11■□□□□ 0.01
CLK3-224ENST00000568605 SGMS1Q86VZ5 419 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 ADGRF4Q8IZF3 695 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 UBA5Q9GZZ9 404 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 MAD2L2Q9UI95 211 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 SNX14Q9Y5W7 946 aa15.11■□□□□ 0.01
CLK3-224ENST00000568605 DNAJC25-GNG10A0A024R161 153 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 POTEFA5A3E0 1075 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 MSCO60682 206 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 GJA8P48165 433 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 CACNB2Q08289 660 aaPredicted RBP15.1■□□□□ 0.01
CLK3-224ENST00000568605 ZNF792Q3KQV3 632 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 ADCK5Q3MIX3 580 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 STAG2Q8N3U4 1231 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 U2AF1L4Q8WU68 220 aaKnown RBP15.1■□□□□ 0.01
CLK3-224ENST00000568605 DEFB118Q96PH6 123 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 MPHOSPH6Q99547 160 aaKnown RBP15.1■□□□□ 0.01
CLK3-224ENST00000568605 LZTS2Q9BRK4 669 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 LRRC2Q9BYS8 371 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 CPVLQ9H3G5 476 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 SENP2Q9HC62 589 aa15.1■□□□□ 0.01
CLK3-224ENST00000568605 A1CFQ9NQ94 594 aaKnown RBP15.1■□□□□ 0.01
CLK3-224ENST00000568605 FLRT1Q9NZU1 646 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 393.3 ms