RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 FAM160B2Q86V87 743 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 NCAPG2Q86XI2 1143 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 ADGRF4Q8IZF3 695 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 ZNF654Q8IZM8 581 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 MB21D1Q8N884 522 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 SHCBP1Q8NEM2 672 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 TRPV1Q8NER1 839 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 CLEC4DQ8WXI8 215 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 TBC1D5Q92609 795 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 MTMR8Q96EF0 704 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 JAKMIP1Q96N16 626 aaKnown RBP10.8□□□□□ -0.68
VPS35-206ENST00000565228 KIF2CQ99661 725 aa10.8□□□□□ -0.68
VPS35-206ENST00000565228 LARP6Q9BRS8 491 aaKnown RBP10.8□□□□□ -0.68
VPS35-206ENST00000565228 RBBP6Q7Z6E9 1792 aaKnown RBP10.8□□□□□ -0.68
VPS35-206ENST00000565228 DNAJC25-GNG10A0A024R161 153 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 ADCY3O60266 1144 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 GNRH1P01148 92 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 GRK4P32298 578 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 MCM5P33992 734 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 SLC4A3P48751 1232 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 NT5C2P49902 561 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 SOX10P56693 466 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 TRDNQ13061 729 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 MAP2K5Q13163 448 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 TOB2Q14106 344 aaPredicted RBP10.79□□□□□ -0.68
VPS35-206ENST00000565228 ZNF792Q3KQV3 632 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 WDR78Q5VTH9 848 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 CASC1Q6TDU7 716 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS35-206ENST00000565228 DHX32Q7L7V1 743 aaKnown RBP10.79□□□□□ -0.68
VPS35-206ENST00000565228 CCDC144CPQ8IYA2 1237 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 IL17RAQ96F46 866 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 AGXT2Q9BYV1 514 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 UNC93B1Q9H1C4 597 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 ZSWIM6Q9HCJ5 1215 aa10.79□□□□□ -0.68
VPS35-206ENST00000565228 ISY1Q9ULR0 285 aaKnown RBP10.79□□□□□ -0.68
VPS35-206ENST00000565228 COL6A3P12111 3177 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 SLC15A5A6NIM6 579 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 NFIBO00712 420 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 ZBED4O75132 1171 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 REC8O95072 547 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 INHAP05111 366 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 HOXC6P09630 235 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 RPS6KB1P23443 525 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 CDC27P30260 824 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 LIFRP42702 1097 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 CNTN2Q02246 1040 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 FUT2Q10981 343 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 QRICH1Q2TAL8 776 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 CCDC178Q5BJE1 867 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 PPP4R3BQ5MIZ7 849 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 PRAMEF19Q5SWL8 479 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 MAP3K21Q5TCX8 1036 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 PRPF38BQ5VTL8 546 aaKnown RBP10.78□□□□□ -0.68
VPS35-206ENST00000565228 Q6ZUG5 572 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 SGMS1Q86VZ5 419 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 SRBD1Q8N5C6 995 aaKnown RBP10.78□□□□□ -0.68
VPS35-206ENST00000565228 RAET1EQ8TD07 263 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 CHURC1Q8WUH1 139 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 COA7Q96BR5 231 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 SHISA4Q96DD7 197 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 NUDT12Q9BQG2 462 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 TEX13BQ9BXU2 312 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 UPF3BQ9BZI7 483 aaKnown RBP10.78□□□□□ -0.68
VPS35-206ENST00000565228 RIOX1Q9H6W3 641 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 VAT1LQ9HCJ6 419 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 A1CFQ9NQ94 594 aaKnown RBP10.78□□□□□ -0.68
VPS35-206ENST00000565228 HOMER2Q9NSB8 354 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 FRMPD3Q5JV73 1810 aa10.78□□□□□ -0.68
VPS35-206ENST00000565228 hCG_1642624A0A1W2PR95 340 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 SOWAHBA6NEL2 793 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 KLRF2D3W0D1 207 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 ADAMTS3O15072 1205 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 ICAM1P05362 532 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 PARP1P09874 1014 aaKnown RBP10.77□□□□□ -0.69
VPS35-206ENST00000565228 CASTP20810 708 aaKnown RBP10.77□□□□□ -0.69
VPS35-206ENST00000565228 PTGS1P23219 599 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 CCND3P30281 292 aaPredicted RBP10.77□□□□□ -0.69
VPS35-206ENST00000565228 CYP2C19P33261 490 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 OAZ1P54368 228 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 PRMT2P55345 433 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 APOBRQ0VD83 1088 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 IKQ13123 557 aaPredicted RBP10.77□□□□□ -0.69
VPS35-206ENST00000565228 CDC37Q16543 378 aaPredicted RBP10.77□□□□□ -0.69
VPS35-206ENST00000565228 ASPRV1Q53RT3 343 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 GPATCH4Q5T3I0 446 aaKnown RBP10.77□□□□□ -0.69
VPS35-206ENST00000565228 RNF20Q5VTR2 975 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 APOA5Q6Q788 366 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 NUP133Q8WUM0 1156 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 TMEM87BQ96K49 555 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 PIGSQ96S52 555 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 MMP19Q99542 508 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 MTA3Q9BTC8 594 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 MROH8Q9H579 483 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 RNF146Q9NTX7 359 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 FOXD4L1Q9NU39 408 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 COL20A1Q9P218 1284 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 LRRC37A2A6NM11 1700 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 WDR19Q8NEZ3 1342 aa10.77□□□□□ -0.69
VPS35-206ENST00000565228 EPB41L2O43491 1005 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms