RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	VWA3B	Q502W6	1294 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	ZPBP2	Q6X784	338 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	SAPCD2	Q86UD0	394 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	CCDC84	Q86UT8	332 aa	Predicted RBP	3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	AEBP1	Q8IUX7	1158 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	ZNF526	Q8TF50	670 aa	Predicted RBP	3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	C8orf49	Q96NF6	230 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	RBM15	Q96T37	977 aa	Known RBP eCLIP	3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	SETDB2	Q96T68	719 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	LNPK	Q9C0E8	428 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	SCAND2P	Q9GZW5	306 aa	Predicted RBP	3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	TNFRSF12A	Q9NP84	129 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	KLHL3	Q9UH77	587 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	ACSL6	Q9UKU0	697 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	WWC3	Q9ULE0	1092 aa		3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	GPR55	Q9Y2T6	319 aa	Predicted RBP	3.76	□□□□□ -1.81
SPG11-223	ENST00000560858	ERICH3	Q5RHP9	1530 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858		A0A1W2PQJ5	194 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	CHURC1-FNTB	B4DL54	471 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	TFE3	P19532	575 aa	Predicted RBP	3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	FMR1	Q06787	632 aa	Known RBP eCLIP	3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	PDE4C	Q08493	712 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	MLEC	Q14165	292 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	BBS9	Q3SYG4	887 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	SLCO6A1	Q86UG4	719 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	ZFPM1	Q8IX07	1006 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	RETREG2	Q8NC44	543 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	KIF2C	Q99661	725 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	CDADC1	Q9BWV3	514 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	SOGA1	O94964	1423 aa		3.75	□□□□□ -1.81
SPG11-223	ENST00000560858	PRR36	Q9H6K5	1346 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	ATAD2B	Q9ULI0	1458 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	FZD7	O75084	574 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	SLPI	P03973	132 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	NCAM1	P13591	858 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	ACVRL1	P37023	503 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	NBPF9	Q3BBW0	867 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	PAQR3	Q6TCH7	311 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	TMC3	Q7Z5M5	1100 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	FAM9A	Q8IZU1	332 aa	Predicted RBP	3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	CARF	Q8N187	725 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	DVL3	Q92997	716 aa	Predicted RBP	3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	RNF38	Q9H0F5	515 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	REV1	Q9UBZ9	1251 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	RUSC2	Q8N2Y8	1516 aa		3.74	□□□□□ -1.81
SPG11-223	ENST00000560858	RGS13	O14921	159 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	SIGLEC6	O43699	453 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	PRAMEF1	O95521	474 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	PLA2G1B	P04054	148 aa	Known RBP	3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	CYBB	P04839	570 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	HTRA3	P83110	453 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	KISS1R	Q969F8	398 aa	Predicted RBP	3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	ANTXR1	Q9H6X2	564 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	IMPACT	Q9P2X3	320 aa		3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	DBR1	Q9UK59	544 aa	Known RBP	3.73	□□□□□ -1.81
SPG11-223	ENST00000560858	VPS8	Q8N3P4	1428 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	HTR3B	O95264	441 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	PLAT	P00750	562 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	ATF2	P15336	505 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	GNA15	P30679	374 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	SARS	P49591	514 aa	Known RBP	3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	RAD51AP2	Q09MP3	1159 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	KIAA2012	Q0VF49	1180 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	CRB2	Q5IJ48	1285 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	TTLL7	Q6ZT98	887 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	JAML	Q86YT9	394 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	KRTAP3-1	Q9BYR8	98 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	PRDM14	Q9GZV8	571 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	ERVK13-1	Q9NX77	482 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	NTM	Q9P121	344 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858	TLR6	Q9Y2C9	796 aa		3.72	□□□□□ -1.81
SPG11-223	ENST00000560858		F8W031	263 aa	Predicted RBP	3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	LDHB	P07195	334 aa	Known RBP	3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	FBLN1	P23142	703 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	BMP8B	P34820	402 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	MVK	Q03426	396 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	NBPF12	Q5TAG4	269 aa	Predicted RBP	3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	HLA-DQA1	Q5Y7H0	255 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	BICRAL	Q6AI39	1079 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	GLB1L	Q6UWU2	654 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	BNC2	Q6ZN30	1099 aa	Predicted RBP	3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	SPRED1	Q7Z699	444 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	FAM124A	Q86V42	546 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	GATAD2B	Q8WXI9	593 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	CHST7	Q9NS84	486 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	AK5	Q9Y6K8	562 aa		3.71	□□□□□ -1.82
SPG11-223	ENST00000560858	ZNF536	O15090	1300 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	FAM221A	A4D161	298 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	SRGAP3	O43295	1099 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	VAV1	P15498	845 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	RAG1	P15918	1043 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	PRR5	P85299	388 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	SNW1	Q13573	536 aa	Known RBP	3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	CRIP3	Q6Q6R5	217 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	B3GNT8	Q7Z7M8	397 aa		3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	ZNF761	Q86XN6	746 aa	Predicted RBP	3.7	□□□□□ -1.82
SPG11-223	ENST00000560858	NAT16	Q8N8M0	369 aa		3.7	□□□□□ -1.82

Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms